BAC Information

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BAC

Clone NameMSMg01-439G16
Chromosome5 (Build37)
Map Location 131,103,944 - 131,104,185
singlet/doubletsinglet
Overlap geneCaln1
Upstream geneMmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439G16.T7 (MSMg01no439_g16.b1)MSMg01-439G16.TJ (MSMg01no439_g16.g1)
ACCAG529775AG529776
length773773
length of high quality
(start - end)
375 (41 - 415)242 (69 - 310)
definitionCHROMAT_FILE: MSMg01no439_g16.b1 PHD_FILE: MSMg01no439_g16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:32 2005CHROMAT_FILE: MSMg01no439_g16.g1 PHD_FILE: MSMg01no439_g16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTTCTCATCACCTATAACTGCAACTCCAGGGCATCAGACAATATCTTCT
AGTCTCAGGGATTCACACACACACACACACACACACACACACACACACAC
ACACACACACACACCCATAACACACACATATACATAAATATAAATAAAAA
TAAATCTTTAAAAAATCCGCAACAAAACTGGACAGAAATCAACCAAAGTA
AAAAAATCTGAATGTGTGTGTTTGTGTGTGTTTGTGTTGTGGAGGCCAGA
GTTCCTAGCCTTCCACCTTTTTTGAGACAGGGTCTGTCCTCTGCAGCTAG
CTGCAATGTGTAGTAGGCTAACTGGCCTGTGGGAATCCAGGAATTCTCTT
GTCTGCATCTCCTGCATCATGGTAGGGGTCTTAAAGAGATACAGACTCCT
GCCACATGGGCTCACGGATCTGAACCCAGGTCCTTGTGATTGTACAACAG
GTACCCCCTGAGCCACCTTTCCAGACTCAGAATAATTTCCCCCAATAACT
ACACCCTGTGCCCACGCGTGTGCGCTGCCCCCTCCCAGTTTTCCCCCTTC
CCTTTTTCCAACCCTTCCACCTTACCCTCCCCCCTTTCTTATTCCACTTC
CCCCCCCTTTCACCACTTCATATCCCTAACCGCCCATAATATTCCCTACA
TTTATCTACTTCCCTTCCCCGCACCCACCCCTTTTCCATACCTTATCTTC
CCCCATTTCATCCCATCCCCTTG
TAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXACTGGCTGTTTTCTTCCCCACTCCTGGAGGGA
ATGTTCCAAATGAGAGGCAGTACCTGCACCACCTGTGCTTGCATCTGGCC
ATCTTGCTGCAGGGACAGGCGGGCAGGGAAACAAAGCCTTCATCACTTTG
TGAACTTTTATCCAGCAAAAGTTCTTTCCTTAACCCATCAGTACCTAGTG
ATTGTCACAGACTATTAGGAAACTCAAGGCGCCCGCCCCCTAAAATCTCC
CTTGCTTGTCTTTCTCTAGTGGAGGAGTGCAAACCTTTTAGACACTTTCC
CAAATGATGTTGCGCTGAACCCCAAGTCTCTGTCTTTGCAAGGTACAGTT
GCCATGGCAACTCCAGCTAATGAATATGTATGCAAATGATCAAAGAATGT
ATTCATCATTTGACAGTTGCTCTATTCGCCTTGCCCTTCTCATGACTTGT
AACGCTGAATTTTGGCTCATTACAAAAGTATGCCTTCGGCACAACCCTTT
TCACTCTTTCCGCCTTTTCCTCCCCCTTTCCCATTTCTTTTTTTCCCCCC
CTTTTTCTTTTTCTCCCCCCTTTCTTTCCCCTTCCCCCCCCCTATTCATT
TCCTTTTTTTCTCCCCCCACCTTTTCCTTTCCCCCTTTCCTTTTTTCTCT
CTCTTTTTTCCCTCACTTTTTTCCTCTCCCCACTAATCTTTTTCTCCACT
TTTCCTTTTCTTCTTCACTTTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_g16.g1 MSMg01no439_g16.g1 CHROMAT_FILE:
MSMg01no439_g16.g1 PHD_FILE: MSMg01no439_g16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:32 2005
         (242 letters)



>mm_chr5_131103744_131104385
          Length = 642

 Score =  460 bits (238), Expect = e-134
 Identities = 241/242 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actggctgttttcttccccactcctggagggaatgttccaaatgagaggcagtacctgca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actggctgttttcttccccactcctggagggaatgttccaaatgagaggcagtacctgca 383

                                                                       
Query: 61  ccacctgtgcttgcatctggccatcttgctgcagggacaggcgggcagggaaacaaagcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccacctgtgcttgcatctggccatcttgctgcagggacaggcgggcagggaaacaaagcc 323

                                                                       
Query: 121 ttcatcactttgtgaacttttatccagcaaaagttctttccttaacccatcagtacctag 180
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcaccactttgtgaacttttatccagcaaaagttctttccttaacccatcagtacctag 263

                                                                       
Query: 181 tgattgtcacagactattaggaaactcaaggcgcccgccccctaaaatctcccttgcttg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tgattgtcacagactattaggaaactcaaggcgcccgccccctaaaatctcccttgcttg 203

             
Query: 241 tc 242
           ||
Sbjct: 202 tc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)