BAC Information

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BAC

Clone NameMSMg01-439G19
Chromosome5 (Build37)
Map Location 87,347,347 - 87,347,846
singlet/doubletsinglet
Overlap geneUgt2b1
Upstream geneCenpc1, LOC100039521, AI586015, Ube1l2, Gnrhr, Tmprss11c, Tmprss11d, Tmprss11a, 9930032O22Rik, Tmprss11f, Tmprss11b, Tmprss11e, A730098D12Rik, LOC622056, Ugt2b34
Downstream geneLOC665424, LOC545767, Ugt2b35, Ugt2b36, LOC665440, Ugt2b5, LOC435848, Ugt2b37, LOC665468, Ugt2a3, LOC665476, LOC665483, LOC665494, LOC100039818, Ugt2b38, Ugt2a2, Ugt2a1, Sult1b1, Sult1d1, Sult1e1, Csn1s1, Csn2, Csn1s2a, Csn1s2b, 4930432K09Rik, EG654494, Odam, BC037156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439G19.T7 (MSMg01no439_g19.b1)MSMg01-439G19.TJ (MSMg01no439_g19.g1)
ACCAG529781AG529782
length765722
length of high quality
(start - end)		423 (46 - 468)500 (69 - 568)
definitionCHROMAT_FILE: MSMg01no439_g19.b1 PHD_FILE: MSMg01no439_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:32 2005CHROMAT_FILE: MSMg01no439_g19.g1 PHD_FILE: MSMg01no439_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTT
TCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCC
TATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTT
TTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCAT
GAGGTCCCATTTGTCAATTCTCGATCTTACAGCAAAAGCCATTGCCGTTC
TGTTCAGGAATTTTTCCCCTATGCCCATATCTTCAAGATTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGAT
CCACTTAGATTTGACCTTAGTACAAGGAGATAGGTATGGATCGATTCGAA
TTCTTATACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAATG
TTGACTTTCTTTCCCCTGGAGGGTTTTAGCTCCCCTTGGCAAAGACAAAG
TGGACATAAGTGTGGGGGGTTCATTTTTGGGGCGTCCATTTCTATTCCCT
TGGGGCAAATAATCTGGGGCGGAACCCAGTACATTGGGGGTTTTTTTATT
TAAACGGCCCGGCCGAAAGGTTTAAGCCCCATTCCGGGGGTTTCCCCCCC
AAAGCCTTTTTATCCTTTTTATCGAATTTTCGCTCTCCCCACCTTTTTGG
GTCCCTCAAAAAATT

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTTANACTCTACAGGGTCATATCTCATGCTG
GATATCTCCTCTCTAGTTTTGGTTTCTCCTCTTCTCTTCTATCTCTGTTT
CCTAATTTCTTTTTATAATCAGATTCATGTTTTGAAAACACTTGCTAAGT
TATTATTCTTCCTTGAACAGAATTTCCAGCAGACTTCTGACTGGATGGAA
AGCAATGTAATTGTGTTCCTGGACTAGGAGACTGTGTATGGAAGAACCAG
GTGCACTTTCTTCTGTTATTTTGCCTCTGGATATTCTCATTAGGTACATT
TGTCTATTGGAATACCTTGAAACTACCAACAGTGTTCTCTGGGTATGGTA
ATAATTTAATACTCTCTCTCATTTCTTCAGTACTGGTTATGCAATATCAC
ATATCATTATAGAAATTAAAGTTTTACCAAAAGTTTTATAACTTCAGAAA
ATATGGGTAAATGTTTAACTTTTCATTTAAGATCATGGTTCATGAATACT
ATGTACATTCTATCTTGAAATAGTGTCCTTGTTACCAATAGACATATATT
TGTGATATTATTTATGTATATAGAATAGTTTAGGACTTATTTTGTTTCAT
CCCTTGAACCTAAATTCAAGGTATCTTTAATGTTAAAGTAACCACTATTT
TATAAATGGACCATCCCCAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_g19.g1 MSMg01no439_g19.g1 CHROMAT_FILE:
MSMg01no439_g19.g1 PHD_FILE: MSMg01no439_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:33 2005
         (500 letters)



>mm_chr5_87347147_87348046
          Length = 900

 Score =  953 bits (493), Expect = 0.0
 Identities = 498/500 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttanactctacagggtcatatctcatgctggatatctcctctctagttttggtttctc 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttaaactctacagggtcatatctcatgctggatatctcctctctagttttggtttctc 260

                                                                       
Query: 61  ctcttctcttctatctctgtttcctaatttctttttataatcagattcatgttttgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctcttctcttctatctctgtttcctaatttctttttataatcagattcatgttttgaaaa 320

                                                                       
Query: 121 cacttgctaagttattattcttccttgaacagaatttccagcagacttctgactggatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacttgctaagttattattcttccttgaacagaatttccagcagacttctgactggatgg 380

                                                                       
Query: 181 aaagcaatgtaattgtgttcctggactaggagactgtgtatggaagaaccaggtgcactt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagcaatgtaattgtgttcctggactaggagactgtgtatggaagaaccaggtgcactt 440

                                                                       
Query: 241 tcttctgttattttgcctctggatattctcattaggtacatttgtctattggaatacctt 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tctcctgttattttgcctctggatattctcattaggtacatttgtctattggaatacctt 500

                                                                       
Query: 301 gaaactaccaacagtgttctctgggtatggtaataatttaatactctctctcatttcttc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaaactaccaacagtgttctctgggtatggtaataatttaatactctctctcatttcttc 560

                                                                       
Query: 361 agtactggttatgcaatatcacatatcattatagaaattaaagttttaccaaaagtttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agtactggttatgcaatatcacatatcattatagaaattaaagttttaccaaaagtttta 620

                                                                       
Query: 421 taacttcagaaaatatgggtaaatgtttaacttttcatttaagatcatggttcatgaata 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taacttcagaaaatatgggtaaatgtttaacttttcatttaagatcatggttcatgaata 680

                               
Query: 481 ctatgtacattctatcttga 500
           ||||||||||||||||||||
Sbjct: 681 ctatgtacattctatcttga 700


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 900
Length adjustment: 10
Effective length of query: 490
Effective length of database: 890
Effective search space:   436100
Effective search space used:   436100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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