Query= MSMg01no439_k01.b1 MSMg01no439_k01.b1 CHROMAT_FILE:
MSMg01no439_k01.b1 PHD_FILE: MSMg01no439_k01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:48 2005
(244 letters)
>mm_chr5_48821013_48821653
Length = 641
Score = 337 bits (174), Expect = 5e-97
Identities = 221/244 (90%), Gaps = 13/244 (5%)
Strand = Plus / Plus
Query: 1 gttgttatttgttagacagttattcttattccaaacacgtatctggacctggggctgcag 60
||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 211 gttgttatttgttagacagttattc----------cacttatctggacctggggctgcag 260
Query: 61 ggacaaaccagcaggcaggtccatacctgccaagaggcatccttcagcctatttcattct 120
||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 ggacaaatcagcaggcagatccatacctgccaagaggcttccttcagcctatttcattct 320
Query: 121 tgcatattggacacatacacaaaaagatctaagaaactaatatcattctgaaatttactg 180
||||||||| ||||||||||| ||||||||||||||||||||| ||||||| ||||||
Sbjct: 321 tgcatattgaacacatacacacaaagatctaagaaactaatat---tctgaaacttactg 377
Query: 181 ggcagaagactgtgggaaagctaactttttatgtctacatatgcatgtgctcatttgtga 240
||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||
Sbjct: 378 ggcagaagactgtggaaaagctagctttttatgtctgcatatgcatgtgctcatttgtga 437
Query: 241 gaca 244
||||
Sbjct: 438 gaca 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 641
Length adjustment: 9
Effective length of query: 235
Effective length of database: 632
Effective search space: 148520
Effective search space used: 148520
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no439_k01.g1 MSMg01no439_k01.g1 CHROMAT_FILE:
MSMg01no439_k01.g1 PHD_FILE: MSMg01no439_k01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:48 2005
(242 letters)
>mm_chr5_48991828_48992469
Length = 642
Score = 460 bits (238), Expect = e-134
Identities = 241/242 (99%)
Strand = Plus / Minus
Query: 1 ttgttgttttgtaatacagttgagcccatagtaagagcttagaaaattaacttactagag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgttgttttgtaatacagttgagcccatagtaagagcttagaaaattaacttactagag 383
Query: 61 ccagatgtatttcctacaattccctttaagttgagaactttagttgaggtatgtcgacac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ccagatgtatttcctacaattccctttaagttgagaactttagttgaggtatgtcgacac 323
Query: 121 taaattcaacgatgaaaatgttttcaaacaagttgagtgccttgcagaagttcatagaat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 322 taaattcaacgatgaaaatgttttcaaacaagttgagtgccttgcagaagttcatagact 263
Query: 181 atagaggcagagagtgagttcctagggacaagataagactgggaagccttcctggatcct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atagaggcagagagtgagttcctagggacaagataagactgggaagccttcctggatcct 203
Query: 241 ag 242
||
Sbjct: 202 ag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space: 147489
Effective search space used: 147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
