BAC Information

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BAC

Clone NameMSMg01-439O18
Chromosome5 (Build37)
Map Location 54,102,622 - 54,103,023
singlet/doubletsinglet
Overlap genenone
Upstream genePi4k2b, Zcchc4, Anapc4, Slc34a2, 2310045A20Rik, 1810013D10Rik, LOC100041198, LOC100041911, Rbpj, Cckar
Downstream geneTbc1d19, Stim2, EG666377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439O18.T7 (MSMg01no439_o18.b1)MSMg01-439O18.TJ (MSMg01no439_o18.g1)
ACCAG530160AG530161
length769774
length of high quality
(start - end)
413 (40 - 452)243 (70 - 312)
definitionCHROMAT_FILE: MSMg01no439_o18.b1 PHD_FILE: MSMg01no439_o18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:10 2005CHROMAT_FILE: MSMg01no439_o18.g1 PHD_FILE: MSMg01no439_o18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:10 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATT
CCCATCCTCTGCCATGCTCAGTCCCCTGAAGAGATCACTGGGAAGGGTGG
TGGGCACGCTAGAAATACCTCATGCTTTGATTGGTAGCAGTTGCAGGTGA
ATTGACAACAATTGTCCAAATTGAATAAGAATGGTTTAAGTGTCTCTCAG
TCCCCGGAGATATACAATAGCAGGGAGGGCTGAGCCTGCGCACTCCCTCC
ATTTGAATAGCCTTTTGGATTTCAGGGTCTTTTCTGCCAAAGACTGAACT
GCAGGAGACGATGATCTATTTCAGTGGGGTCGTGGGTGATGAGATTATTA
CCGGCTGCTCAAGCTCATTTCTGTTTTAGGAACCAATCCTTTTAAAACAC
CAACAAGATTGGCGCGCACTACTTCCCTCATTATATAACATTAAATGTGG
TCAAAAAACATTAGTGGGCAAAAGGTATATTTAAGTTTCAGCGCCCCCGA
TCCATGCTTTTCTAACCTGAATCCTTTTGATATAAATTTTTTTGCACTTC
CATGCGCCTGTTACTGATCACTGTCCCTGTTTTCCACCTTTTTCCTTTAT
CCCCTTACTCTCTTTTTTCCCCCTATTTTTTTTCCCCTTTCCACCCCTCT
CCCCCCTTATTTTCCTTTCCTCACCTGTCTTTTCGTCTTTTTTTCTCTTA
TTCCCTCTGCTCGGCTTCCCCCTTTTTTCATTTTCTTTTTCTTCCCTCTT
CTTCCTTCCCTCCCCCTTC
CATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTAGCCTGACTTCCCTCAGTGATGAGCGGTG
ATATGGAAGTATAAGGCAGATGAGCCCTAGAGGGCTCCCTCCTTCCTCAC
CGTGCTGCTTTGTCATGGTGTCTCATGGTGTCTCATCGCAGCAACGGAAA
CCCTAACCAAGACCGCTGGCTTCCACCTTAACAGGATTCTTAAGAACCCT
GAGTTATTAAAAAGACATCCATTCTTGCACTGGGATTTAAATTAAAATGT
ATTATTAAGGTTCTCTTTAAGTGGGTGTAAGAGAGAAACCAGGAATAAAA
ATAAAAAGTGGTCCTATCTTAGGCTAAGGTGGAGACACGCAGAGCTGGTC
TTTGTGTGAGGAAAGAAGGGAATGACGAGAAAGAGACCCCCAATTGAGCA
CAGTAGCAGCACTGATACACTGCACATCAAACACCGTTTTCAGTCCCTCT
CACCCATTCGTTTTTTACTGCAGATCAATCCATCATATATTGCCCCACTT
TTGCTGACCTTTTTTCCCTGTTCCTTTACCCTTTTCTTGTGTTTTTTCTA
ACCCAAATTTGTCGCTCTCCCCCGTTTTTTACCTGTATCCCTCTCTTTTT
CTCTTTTTTTTTTCTCCTCTTCCTTTTTCTTTTCCCCCCTTACCTTTTAC
CCTCTCCTTTTTCCTCTCCTTTTTGCTTTTCACCCATCATTACTTCACAC
TTGTTCTTTATTTCTTACCTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_o18.b1 MSMg01no439_o18.b1 CHROMAT_FILE:
MSMg01no439_o18.b1 PHD_FILE: MSMg01no439_o18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:10 2005
         (413 letters)



>mm_chr5_54102417_54103225
          Length = 809

 Score =  719 bits (372), Expect = 0.0
 Identities = 396/406 (97%), Gaps = 4/406 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcccatcctctgccatgctcagtcccctgaagagatcactgggaagggtggtggg 65
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcccatcctcaggcatgctcagtcccctgaagagatcactgggaagggtggtggg 265

                                                                       
Query: 66  cacgctagaaatacctcatgctttgattggtagcagttgcaggtgaattgacaacaattg 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cacgctagaaatacctcatgctttgattggtagcagttgcaggtgaattgacaacaattg 325

                                                                       
Query: 126 tccaaattgaataagaatggtttaagtgtctctcagtccccggagatatacaatagcagg 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tccaaattgaataagaatggtttaagtgtctctcagtccccggagatatacaatagcagg 385

                                                                       
Query: 186 gagggctgagcctgcgcactccctccatttgaatagccttttggatttcagggtcttttc 245
           ||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ga----tgagcctgcgcactccctccatttgaatagccttttggatttcagggtcttttc 441

                                                                       
Query: 246 tgccaaagactgaactgcaggagacgatgatctatttcagtggggtcgtgggtgatgaga 305
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 442 tgccaaagactgaactgcaggagacgatgagcaatttcagtggggtcgtgggtgatgaga 501

                                                                       
Query: 306 ttattaccggctgctcaagctcatttctgttttaggaaccaatccttttaaaacaccaac 365
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ttattaccagctgctcaagctcatttctgttttaggaaccaatccttttaaaacaccaac 561

                                                         
Query: 366 aagattggcgcgcactacttccctcattatataacattaaatgtgg 411
           |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 562 aagattggcgtgcactacttccctcattatataacattaaatgtgg 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 413
Length of database: 809
Length adjustment: 9
Effective length of query: 404
Effective length of database: 800
Effective search space:   323200
Effective search space used:   323200
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)