NNNNTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCCCACCAGTTAACAAGGAGTGTTCCTCTTTCTTCACATC
CTCACCAACATGTGCTGTCACTTTGAGGGTTTGATCTTAGCTGTTCTGGT
ATGTATAAGGTTGAATATCATGAACTTTTAGATTTTCATTTTCCTGATGA
CTGAGGATGTTGAACATTTCTTTAAGTGTTTCTTGACCATTCAAGAGTCC
TCTGTTGAGAATTTTCTGTTTAGCTCTGTACTCCATTGTTTAATTGTTTT
TTTGTTTGTTTGGTTGATTGGTTGGTTTTTTTGTAGGTTACCTTCTTGAG
TTCTTCATGTATTTTGATATTAGTCCTCTCTCATGCATAGATTTAGGGAA
GCTAGTTTCCTAATCTGTAGGGTGCTATTTTGTCCTATTGACAGTGTTGT
TTGCTTTACAGAAGCTATTAAGTTTCCAGAATCTTCATTTGAATATTGTT
GACCTTACAGCCTGAGCCATTGGTGTTCTATTCAGGAAATTGTCCCCTGT
ACCCATGTGTTTGAGGTTTTTTGCCACTTTCTCTTCTATTANAATTAGTG
CATATGGTTTTATGTGAAAATACTTGACCCACATGGAATAGAGCTTTGTG
CACGGTGATAAATACAGATCTATTTTCATTCTCTACATGCAGTCCACCAG
TTAGACCATTCACTATTTATTGAAA

NNNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACAGGATAGGTACAGAAT
AATGATGATCAAATTACTACCACTCTGACTGCGATGGAAATTCGAGAATT
AGGACCTCCCACTTTCTAGAAGTAGAATACCAGCTGCACACATTCTGAGA
TAATGTTTTCTTAAATGAAGAATAAGAGAGATGAATCACAGCTATGGAGA
AAAATGTGCCACAGAGTTAGGAGGAAAGTATAACTTCTCTCAATACAAGA
GGGGAAAAAGTGTTACAGAATAATGTGGATTGACACTCTGTGCCCGACTA
GATTTCTCTGTGCTTTCCTTCTTAGAAGCAGGAGTGGGGAGGATCTGGAT
TCTTCCTCTGTGGGCAGACCAGACACCTTTTCTTCTGTGTCCTTCTCATT
GGACTAGATAAGCAGTCCATGTTTGTCAAAGCTCACTTAAGATTAGATAC
AGATCAGAGTATTAGAGATAAAGACTGATAGTAAAATTACCTATTGTAAT
AGAAGGGAATTACTAGGAATGTGAGTACTTGAAAATGGAAGGAATAGAAA
TAATTACTATGACACAGAGTCTAGTAGACAAAAACAAAACAAAACAAAAC
AAAACAAAAAACCCATCCTATTTTTTATTCTTCTTGTGAAGAAGAGAGAT
TATGGTTTTTCATGCTTTATGATTNAAAC

Query= MSMg01no440_d13.g1 MSMg01no440_d13.g1 CHROMAT_FILE:
MSMg01no440_d13.g1 PHD_FILE: MSMg01no440_d13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:35 2005
         (641 letters)



>mm_chr5_48140086_48141127
          Length = 1042

 Score = 1085 bits (561), Expect = 0.0
 Identities = 622/645 (96%), Gaps = 9/645 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   acaggataggtacagaataatgatgatcaaattactaccactctgactgcgatggaaatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acaggataggtacagaataatgatgatcaaattactaccactctgactgcgatggaaatt 686

                                                                       
Query: 61  cgagaattaggacctcccactttctagaagtagaataccagctgcacacattctgagata 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgagaattaggacctcccactttctagaagtagaataccagctgcacacattctgagata 626

                                                                       
Query: 121 atgttttcttaaatgaagaataagagagatgaatcacagctatggagaaaaatgtgccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgttttcttaaatgaagaataagagagatgaatcacagctatggagaaaaatgtgccac 566

                                                                       
Query: 181 agagttaggaggaaagtataacttctctcaatacaagaggggaaaaagtgttacagaata 240
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||
Sbjct: 565 agagttaggaggaaagtataacttttctcaatataagaggggaaaaagtgttatagaata 506

                                                                       
Query: 241 atgtggattgacactctgtgcccgactagatttctctgtgctttccttcttagaagcagg 300
           |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtggattgacactctgtgcaagactagatttctctgtgctttccttcttagaagcagg 446

                                                                       
Query: 301 agtggggaggatctggattcttcctctgtgggcagaccagacaccttttcttctgtgtcc 360
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aggggggaggatctggattcttcctctgtgggcagaccagacaccttttcttctgtgtcc 386

                                                                       
Query: 361 ttctcattggactagataagcagtccatgtttgtcaaagctcacttaagattagatacag 420
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 385 ttctcattggactagataagcagtccatgtttgtcaaagctcactttagatcagatacag 326

                                                                       
Query: 421 atcagagtattagagataaagactgatagtaaaattacctattgtaatagaagggaatta 480
           |||||| ||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 325 atcagaatattagagataaagactgatagtaaaattacctattgtaatagaaagaaatta 266

                                                                       
Query: 481 ctaggaatgtgagt-acttgaaaatggaaggaatagaaataattactatgacacagagtc 539
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaggaatgtgagttacttgaaaatggaaggaatagaaataattactatgacacagagtc 206

                                                                       
Query: 540 tagtagacaaaaacaaaa-caaaacaaaacaaaacaaaaaacccatcctatttttt--at 596
           ||||| |||||||||||| |||||   ||||||   ||||||||||||||||||||  ||
Sbjct: 205 tagtaaacaaaaacaaaaacaaaa---aacaaag--aaaaacccatcctattttttttat 151

                                                        
Query: 597 tcttcttgtgaagaagagagattatggtttttcatgctttatgat 641
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 tcttcttgtgaagaagagagattatggtttttcatgctttatgat 106


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1042
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1032
Effective search space:   651192
Effective search space used:   651192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)