Query= MSMg01no440_f09.b1 MSMg01no440_f09.b1 CHROMAT_FILE:
MSMg01no440_f09.b1 PHD_FILE: MSMg01no440_f09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:45 2005
(507 letters)
>mm_chr5_55415835_55416741
Length = 907
Score = 866 bits (448), Expect = 0.0
Identities = 490/506 (96%), Gaps = 6/506 (1%)
Strand = Plus / Plus
Query: 7 gaattcacaacattgtctactgcatttttt-aattgctgaacaaaagtactttatttaga 65
|||||||||||||||| |||||| |||||| ||||||||||||||| |||||||||||||
Sbjct: 203 gaattcacaacattgtttactgc-ttttttaaattgctgaacaaaaatactttatttaga 261
Query: 66 tgcatagatgctaaccctcagcaatgagaaggggaagtggacacaatataccacacttaa 125
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 262 tgcatagatgctaaccctcagcaatgagaaggggaagtggacacaaaataccacacttaa 321
Query: 126 ccaagaagatatttgcaaatgatatatgctgggaaaactcaaaattcatttttgccaatg 185
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ccaagaagatatttgcaattgatatatgctgggaaaactcaaaattcatttttgccaatg 381
Query: 186 gtctgccactgagtatattaaccatagtccagagcacatgctatgcccaggaggagttat 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gtctgccactgagtatattaaccatagtccagagcacatgctatgcccaggaggagttat 441
Query: 246 ccaacacaaagtggacacacaacatgttttttgtttgtgtgtaaagttttatttcatttt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ccaacacaaagtggacacacaacatgttttttgtttgtgtgtaaagttttatttcatttt 501
Query: 306 gtttgggttagtactttttttgtcttgtgagcatcatttttccatttgtttagattttct 365
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtttgggttagtactatttttgtcttgtgagcatcatttttccatttgtttagattttct 561
Query: 366 ttttctgttttctttttagttttttctttattttttttt----gaaagaaagaaaatatg 421
||||||||||||||||||||||||||||| ||||||||| ||||||||||||| | |
Sbjct: 562 ttttctgttttctttttagttttttctttctttttttttttttgaaagaaagaaaacacg 621
Query: 422 ggatttgattgataagaaggtatagaggatcctagtgtatttgtggaaggaaaataatat 481
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ggatttgattgataagaatgtatagaggatcctagtgtatttgtggaaggaaaataatat 681
Query: 482 aatcaaaatatgggagaggttacagt 507
||||||||||||||||||||| ||||
Sbjct: 682 aatcaaaatatgggagaggttgcagt 707
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 507
Length of database: 907
Length adjustment: 10
Effective length of query: 497
Effective length of database: 897
Effective search space: 445809
Effective search space used: 445809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_f09.g1 MSMg01no440_f09.g1 CHROMAT_FILE:
MSMg01no440_f09.g1 PHD_FILE: MSMg01no440_f09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:45 2005
(527 letters)
>mm_chr5_55583848_55584777
Length = 930
Score = 949 bits (491), Expect = 0.0
Identities = 519/534 (97%), Gaps = 11/534 (2%)
Strand = Plus / Minus
Query: 1 actctatactgttgaccaggctggccaaaatctcagaaatacagttggatttcttgaact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 actctatactgttgaccaggctggccaaaatctcagaaatacagttggatttcttgaact 534
Query: 61 gcttaatattggtgtgcatgtttgtcatcacaattggtaaggtttggtgagtcagtcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gcttaatattggtgtgcatgtttgtcatcacaattggtaaggtttggtgagtcagtcttt 474
Query: 121 caatactctcttttctgccttctctctctctcacagttcctagttcctacttgagaatat 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 473 caatactctcttttctgccttctctctctctcacagttcctagttcctacttgataatat 414
Query: 181 ctttttgttcattttaggtctct----tttctgattttttttattctttgcttttgtgcc 236
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 413 ctttttgttcattttaggtctctttcctttctgattttttttattctttgcttttgtgcc 354
Query: 237 tcatatgtatttttt---ttatactgtactatcttcaaagcagatggagatgaccaacga 293
||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcatatgta----ataacttatactgtactatcttcaaagcagatggagatgaccaacga 298
Query: 294 actcagccccaatatagaaaaaaggcaaattgaaatatatcacagctaacttaattaggt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 297 actcagccccaatatagaaaaaaggcaaattgaaatatatcacagctaacttaattaggt 238
Query: 354 taaattgtaattattttcagaaaataaaccatgtatgtaaaatatgaaaatatttattta 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 237 taaattgtaattattttcagaaaataaaccatgtatgtaaaatatgaaaatatttattta 178
Query: 414 ttaaatttagtatcttaatcctgaaattattaatattcttgtaattcttcaaaagtattc 473
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 ttacatttagtatcttaatcctgaaattattaatattcttgtaattcttcaaaagtattc 118
Query: 474 aaatccaggtcatgttgtataanactaaatatataatcttatacatacatatgc 527
|||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 117 aaatccaggtcatgttgtataaaactaaatatataatcttatacatacatatgc 64
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 930
Length adjustment: 10
Effective length of query: 517
Effective length of database: 920
Effective search space: 475640
Effective search space used: 475640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
