NNAACTTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTTGTATTCCGATAGGTCTGCCTTTATATGTTATTTGAC
CTTTTTCCCTTACTGCTTTTAGTATTCTTTCTTTGTTTTGTGCATTTGAT
GTTTTTATTATCATGCGACAGCAGGAATTTCTTTTCTGATCCAATCTATT
TGGAGTTCTGTAGGCTTCTTATATGTTCATGGGCATTTCTTTCTTTAGGT
TGGGGAAGTTTTCTTTATTAATTTTGTTGAAGATATTTACTGGTCCTTTA
ATTGGAAATCTTCCTTCTCATCTATACCTATTATCCTTAGGTTTGGTCTT
CTCATTGTGTCCTGGATTTCCTGGGTGTTTTGTGTTAGGATCTTTTTTCA
TTTCACATTTTCTTGTGTCAATATTTTCTATGGTATATTTTGCACCTGGG
AGTCTCTCTTCCATCTCTTGTTTTCTGTTTGTCATGCTTGCATCTATTGC
TCCTGACTCCTTTCCTAGGTTTTCTATCTCCAGAATGTTCTCTCTTTGAG
ATTTCTTTATTTTTTTCTACTTTCATTTTTAAATCCTGGAAGTGCTTTGT
TCCAATCTTCCCCCTGTTGTATGATTTCTCCTGGATTTCTTTAAGGAAGT
TACATATGACCTTTCCTATCTTTCTTATACCTTCTTCTCGAGTAATTAAC
CTCTTATTCCAATATTTAACTTTCTTTAATGTTTGTAACCTACTTCCCAT
ACATTCTTTT

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTGGGTATAAAAGCACACATCAT
CAGTTCTGTACTTCTTGCTTTATGAGTAAGAGAACTATGGAAACAGGAGG
ATCAACTATAAATACAGCAGGCTGTGTGAATTCCCAAGGTGCTGCAAAGC
AAGAAAATTACAGTAAATAGAAGAACCCTTCCCACAGTCTGTTTTAATAA
ACATATCTAATGGGGAGAGATAAAATGCATAGTTACATCTTTGAAAAACA
ATCTACACAGTGAGGTTTTCAAATGTCCTCACCACTTTAAAAAGGAAATT
TGGAAATGTTATGTGTGGAGAGCAGAGTTTGCATCCCCAGGACCCATAGA
AATGCGAAGCGGGTGTGACAGTGTACTTATAATATTAGAGCTCTGGAGTC
AAAGGTAAGGGATCCCCAAAACAATCTAGGTAGCTTTGCATTCAAGGACA
GAACTGACCTCAGAGGAACTCAGATGTCTCATGTCAACTTCTAATCTCCA
CATGCATGCACACATGTGAATACGCAAGCACACAGTACACACAACAAGTA
ATGTGTTGTAGTGTGTTGTCACTATCCATCAGAAACTATTGAAAACCGAT
TAAAGCATTTACTTGTCTTAAGAACTGGTGACCTATTTTACCCAAGGGTG
GCTTCCCAAATGCCTGGATGCCCTGTGAGGGAAATGGGCCCCCCTGGATT
TCTTTGG

Query= MSMg01no440_g07.g1 MSMg01no440_g07.g1 CHROMAT_FILE:
MSMg01no440_g07.g1 PHD_FILE: MSMg01no440_g07.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:50 2005
         (508 letters)



>mm_chr5_29207984_29208891
          Length = 908

 Score =  907 bits (469), Expect = 0.0
 Identities = 499/509 (98%), Gaps = 2/509 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attgggtataaaagcacacatcatcagttctgtacttcttgctttatg-agtaagagaac 59
           |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct: 201 attgggtataaaagcacacatcatcagttctgtacttcttgcttta-gcagtaagagaac 259

                                                                       
Query: 60  tatggaaacaggaggatcaactataaatacagcaggctgtgtgaattcccaaggtgctgc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatggaaacaggaggatcaactataaatacagcaggctgtgtgaattcccaaggtgctgc 319

                                                                       
Query: 120 aaagcaagaaaattacagtaaatagaagaacccttcccacagtctgttttaataaacata 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aaagtaagaaaattacagtaaatagaagaacccttcccacagtctgttttaataaacata 379

                                                                       
Query: 180 tctaatggggagagataaaatgcatagttacatctttgaaaaacaatctacacagtgagg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tctaatggggagagataaaatgcatagttacatctttgaaaaacaatctacacagtgagg 439

                                                                       
Query: 240 ttttcaaatgtcctcaccactttaaaaaggaaatttggaaatgttatgtgtggagagcag 299
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 440 ttttcaaatgtccacaccactttaaaaaggaaatttggaaatattatgtgtggagagcag 499

                                                                       
Query: 300 agtttgcatccccaggacccatagaaatgcgaagcgggtgtgacagtgtacttataatat 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 500 agtttgcatccccaggacccatagaaatgcgaagcgggtgtgacagtgtacttacaatat 559

                                                                       
Query: 360 tagagctctggagtcaaaggtaagggatccccaaaacaatctaggtagctttgcattcaa 419
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 560 tagagctctggagtcaaaggtaagggatccccaaaacaatcgaggtagctttgcattcaa 619

                                                                       
Query: 420 ggacagaactgacctcagaggaactcagatgtctcatgtcaacttctaatctccacatgc 479
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 620 ggacagagctgacctcagaggaactcagatgtctcatgtcaacttctagtctccacatgc 679

                                        
Query: 480 atgcacacatgtgaatacgcaagcacaca 508
           ||||||||||||||||| |||||||||||
Sbjct: 680 atgcacacatgtgaatatgcaagcacaca 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)