Query= MSMg01no440_g22.b1 MSMg01no440_g22.b1 CHROMAT_FILE:
MSMg01no440_g22.b1 PHD_FILE: MSMg01no440_g22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:53 2005
(409 letters)
>mm_chr5_44437549_44438357
Length = 809
Score = 714 bits (369), Expect = 0.0
Identities = 396/411 (96%), Gaps = 12/411 (2%)
Strand = Plus / Minus
Query: 5 gaattcactagctttatgcacacctgattattattatctgtgtaggtgtgtcagtctatt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattcactagctttatgcacacctgattattattatctgtgtaggtgtgtcagtctatt 722
Query: 65 taggaaggactttcttttctctctctctctcgcacacacacacatacatacacacacatc 124
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 721 taggaaggactttc--ttctctctctct----cacacacacacatacatacacacacatc 668
Query: 125 tctctaacacacacacacacacacacacacacacacacacacaca------cacacacca 178
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 667 tctctaacacacacacacacacacacacacacacacacacacacacacacgcacacacca 608
Query: 179 tgtcactttggaagacagcgaacagaatggctgaaggcagtgatgggcaagcctgttttg 238
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tgtcactttggaagacagcaaacagaatggctgaaggcagtgatgggcaagcctgttttg 548
Query: 239 tcctcatccgagaagtgtgttgatgtatcgccgatacagaatatgacttggaaagtacct 298
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tcctcatccgaggagtgtgttgatgtatcgccgatacagaatatgacttggaaagtacct 488
Query: 299 gagcaggaaccggcctaagcgtgtgaagctcatgggtatcggcattggtggggagtctcc 358
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 487 gagcaggaaccggcctaagcgtgtgaagctcatgggtattggcattggtggggagtctcc 428
Query: 359 ccaaaaccatggatccttgaacaaggtgtggccttctgagttgactctgtc 409
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccaaaaccatggatccttgaacaaggtgtggccttctgagttgactctgtc 377
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 61
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 409
Length of database: 809
Length adjustment: 9
Effective length of query: 400
Effective length of database: 800
Effective search space: 320000
Effective search space used: 320000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_g22.g1 MSMg01no440_g22.g1 CHROMAT_FILE:
MSMg01no440_g22.g1 PHD_FILE: MSMg01no440_g22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:53 2005
(157 letters)
>mm_chr5_44277696_44278252
Length = 557
Score = 282 bits (146), Expect = 5e-81
Identities = 152/154 (98%)
Strand = Plus / Plus
Query: 1 acctcacccttgaatgagccccctaattgattacctaatacaaaattgtcattactgaaa 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 acctcacccttgaatgagccccctaattgattacctaatacaaaatggtcattactgaaa 260
Query: 61 taatttagtcccaagccacactaaatgtgctcaacaggtatatataaagagagagatgga 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 261 taatttagtcccaagccacactaaatgtgctcaacaggtatatataaagagagagaggga 320
Query: 121 gggagagagagagagagagagagagagagagaga 154
||||||||||||||||||||||||||||||||||
Sbjct: 321 gggagagagagagagagagagagagagagagaga 354
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space: 81801
Effective search space used: 81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
