Query= MSMg01no440_k16.b1 MSMg01no440_k16.b1 CHROMAT_FILE:
MSMg01no440_k16.b1 PHD_FILE: MSMg01no440_k16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:12 2005
(521 letters)
>mm_chr5_30731464_30732384
Length = 921
Score = 880 bits (455), Expect = 0.0
Identities = 503/519 (96%), Gaps = 1/519 (0%)
Strand = Plus / Plus
Query: 4 ggaattcttccttattcca-tgagacatcccaggaccctggctcagcccaatgatattca 62
||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ggaattcttccttatgcaaatgagacatcccaggaccctggctcagcccaatgatattca 262
Query: 63 cttaccctgaagcctctacccacgctccaaaggtttaaatagcccttattcctcttaatt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cttaccctgaagcctctacccacgctccaaaggtttaaatagcccttattcctcttaatt 322
Query: 123 aaatgagcctctcaatgaacccggcctccagagatgtctgtttctattggcactaaccca 182
|||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||
Sbjct: 323 aaatgagcctctcaatgaacccagcctccagagatgtttgtttctattggcgctaaccca 382
Query: 183 ttgtggcctgtggtttccatcacctccattgaccctgccccacattccctctcaaggcca 242
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 ttgtggcctgtggtctccatcacctccattgaccctgccccacattccctctcaaggcca 442
Query: 243 cctgtctgaacacggggctgatcatgccattgtgggaaagggagcagagtagggacaacc 302
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 443 cctgtctgaacacggggctgatcatgccattgtgggaaagggagcagggtaggaacaact 502
Query: 303 gggacagaggaaaagggtggaaaaaaaccggcgtgggctggagtctatatccttctggtt 362
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 503 gggacagaggaaaagggtggaaaaaaactggcgtgggctggagtctatatccttctggtt 562
Query: 363 ttgtatcccaggctgacccagaacttgaacatcccccacctcctaagcgctgggttacag 422
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ttgtattccaggctgacccagaacttgaacatcccccacctcctaagcgctgggttacag 622
Query: 423 gctcccaccatcccatctgttttattgggtgctgggaatcgaactcactgtcttgcatgc 482
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 623 gctcccaccatcccatctgttttattgggtgctggggatcgaactcactgtcttgcatgt 682
Query: 483 tagctgagcaccctacccactgagccacacctccagtgc 521
||| ||||||||||||||||||||| |||||||||||||
Sbjct: 683 taggtgagcaccctacccactgagcaacacctccagtgc 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_k16.g1 MSMg01no440_k16.g1 CHROMAT_FILE:
MSMg01no440_k16.g1 PHD_FILE: MSMg01no440_k16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:12 2005
(520 letters)
>mm_chr5_30908000_30908919
Length = 920
Score = 828 bits (428), Expect = 0.0
Identities = 456/478 (95%), Gaps = 21/478 (4%)
Strand = Plus / Minus
Query: 44 cagcaccctccccagggctcaggagctcagatggtagaggctggcgtggcgcctgggaga 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 920 cagcaccctccccagggctcaggagctcagatggtagaggctggcgtggcgcctgggaga 861
Query: 104 agagggactctaggcaacagggacttgggcctgcggcagctgctggaacc-tctttctcc 162
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 860 agagggactctaggcaacagggacttgggcctgcggcagctgctggaaccttctttcccc 801
Query: 163 tgagccagtctgcagatgtgggagcctcatcctcaatattcactcatgcacgtacacaca 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgagccagtctgcagatgtgggagcctcatcctcaatattcactcatgcacgtacacaca 741
Query: 223 cacacacacacacacacacacacacactctcacacacacagcatgtgcatttacacaccg 282
|||||||||| ||||||||||||||||||||||||||||||
Sbjct: 740 cacacacaca--------------------cacacacacagcatgtgcatttacacaccg 701
Query: 283 cagcacattgcctgcctccatgtgacctctgtccaccattcaggtcagagtgcaagagcc 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 cagcacattgcctgcctccatgtgacctctgtccaccattcaggtcagagtgcaagagcc 641
Query: 343 agatgagctacagggtgaccattctcagggaagcagaagacaggcaacagtaagggagag 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 agatgagctacagggtgaccattctcagggaagcagaagacaggcaacagtaagggagag 581
Query: 403 gagtccactttagaaccgctgctcttccctccctcagtacctctaattgaaggtcatgag 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 gagtccactttagaaccgctgctcttccctccctcagtacctctaattgaaggtcatgag 521
Query: 463 tggttggggcttcttcctcctgtaagtcccctcttcctgtccaagggagcacaggctc 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 tggttggggcttcttcctcctgtaagtcccctcttcctgtccaagggagcacaggctc 463
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
