Query= MSMg01no440_n14.b1 MSMg01no440_n14.b1 CHROMAT_FILE:
MSMg01no440_n14.b1 PHD_FILE: MSMg01no440_n14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:26 2005
(169 letters)
>mm_chr5_93635861_93636429
Length = 569
Score = 281 bits (145), Expect = 2e-80
Identities = 160/165 (96%)
Strand = Plus / Minus
Query: 5 gaattccattggttcacagccaagccgtcagtagtctaatccactgtttttacaagtagc 64
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gaattccattggcgcacagccaagccgtcagtagtctaatccactgtttttacaagtagc 310
Query: 65 cttaagcacgcagggtatgatccccttaattttcttatttctaaagtgcttcagtctccc 124
|||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 309 cttaagcacgcaggatatgatccccttaattttcttaattctaaagtgcttcagtctccc 250
Query: 125 atcacccacaggatggttaaaaagatgcatgtccatactcactaa 169
|||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 249 atcacccacaggatggttaaaaagatgcatgtccttactcactaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space: 90321
Effective search space used: 90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no440_n14.g1 MSMg01no440_n14.g1 CHROMAT_FILE:
MSMg01no440_n14.g1 PHD_FILE: MSMg01no440_n14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:26 2005
(477 letters)
>mm_chr5_93477455_93478328
Length = 874
Score = 891 bits (461), Expect = 0.0
Identities = 472/477 (98%), Gaps = 3/477 (0%)
Strand = Plus / Plus
Query: 1 aataggacctggcaccagcgtcagcccggggatgaggaccagcttggcaagctcctgagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aataggacctggcaccagcgtcagcccggggatgaggaccagcttggcaagctcctgagc 260
Query: 61 agctgagagaggtttggcatcatctcttcctccattggagagaaaatagagaatacgtag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctgagagaggtttggcatcatctcttcctccattggagagaaaatagagaatacgtag 320
Query: 121 tttgtgggaatacataaagatgggacattcaacttggggcatatgaaatttgaagggcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttgtgggaatacataaagatgggacattcaacttggggcatatgaaatttgaagggcta 380
Query: 181 taaaaatagagatatctagaagatagctggcaatataattttgggtcgccaaaggcatgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaatagagatatctagaagatagctggcaatataattttgggtcgccaaaggcatgc 440
Query: 241 cattctcatctacaaatggtcattacagcacaggagaggacgtttctttaaaaaaaaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cattctcatctacaaatggtcattacagcacaggagaggacgtttctttaaaaaaaaa-- 498
Query: 301 atgtacaggcaggagagcaagtacaagagaccaaaatggcaatttccagagagaaagagg 360
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 -tgtacaggaaggagagcaagtacaagagaccaaaatggcaatttccagagagaaagagg 557
Query: 361 aaaggccacctatggggacttggaaaggaccccaagaggaacacctgcgtctcagaagag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 aaaggccacctatggggacttggaaaggaccccaagaggaacacctgcgtctcagaagag 617
Query: 421 caggatcaggagggacagctttctagagacactgccaaggctgataagaaggaaaac 477
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 caggatcaagagggacagctttctagagacactgccaaggctgataagaaggaaaac 674
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 874
Length adjustment: 10
Effective length of query: 467
Effective length of database: 864
Effective search space: 403488
Effective search space used: 403488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
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