Query= MSMg01no441_a21.b1 MSMg01no441_a21.b1 CHROMAT_FILE:
MSMg01no441_a21.b1 PHD_FILE: MSMg01no441_a21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:42 2005
(543 letters)
>mm_chr5_65240700_65241641
Length = 942
Score = 1015 bits (525), Expect = 0.0
Identities = 537/541 (99%), Gaps = 1/541 (0%)
Strand = Plus / Minus
Query: 1 tgcagtgcctgacaagtcaaagaccgggaagcatattcaacttggtctccttaaagttcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tgcagtgcctgacaagtcaaagaccgggaagcatattcaacttggtctccttaaagttcg 681
Query: 61 catctagccactcggtcggtcacgctattccttacaagggaagaggcatcacaaggaaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 catctagccactcggtcggtcacgctattccttacaagggaagaggcatcacaaggaaac 621
Query: 121 cagccactcctttctcattccacatacccagctcagccctgctcaaccatttgatgttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagccactcctttctcattccacatacccagctcagccctgctcaaccatttgatgttta 561
Query: 181 taaaaagtgagttccgatgagtaaggttgaaagcttttgcttattgaaaaggagatcggc 240
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 560 taaaaagtgagttccgatgagtaaggttgaaagcttttgtttattgaaaaggagatcggc 501
Query: 241 aaacttaggctggcttgaggatgtcacagaacttcagggtagtggaggaaagtggctgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaacttaggctggcttgaggatgtcacagaacttcagggtagtggaggaaagtggctgac 441
Query: 301 aaaaatcaggtagctggcaggagacaggaccagatgaatgcttttctaatgttttctgga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 aaaaatcaggtagctggcaggagacaggaccagatgaatgcttttctaatgttttctgga 381
Query: 361 ctagttacttttctcacaggactaagatggactgctgaagatagactaatacagccccac 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctagttacttttctcacaggactaagatggactgctgaagatagactaatacagccccac 321
Query: 421 ctgtgtgacagagcactcattttctctttctttgttagtccctttctcctatttgcacgg 480
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctgggtgacagagcactcattttttctttctttgttagtccctttctcctatttgcacgg 261
Query: 481 atgcccactttgaagctgaaagtttaaactgtgattttttaattatgtatgcatttaaaa 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 260 atgcccactttgaagctgaaagtttaaactgtga-tttttaattatgtatgcatttaaaa 202
Query: 541 a 541
|
Sbjct: 201 a 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 942
Length adjustment: 10
Effective length of query: 533
Effective length of database: 932
Effective search space: 496756
Effective search space used: 496756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_a21.g1 MSMg01no441_a21.g1 CHROMAT_FILE:
MSMg01no441_a21.g1 PHD_FILE: MSMg01no441_a21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:42 2005
(509 letters)
>mm_chr5_65098236_65099143
Length = 908
Score = 938 bits (485), Expect = 0.0
Identities = 503/509 (98%), Gaps = 1/509 (0%)
Strand = Plus / Plus
Query: 1 tgtgaaaaggacttagaattcattgctaaaattttaaaagaaataaaacaaacattcctg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgaaaaggacttagaattcattgctaaaattttaaaagaaataaaacaaacattcctg 260
Query: 61 ccacaagtggactcaatgtctaacaagcacttctcgggcagctttggtagcccaccttcc 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 261 ccacaagtggactcaatgtctaacaagcacttctcggacagctttggtagcccaccttcc 320
Query: 121 tttagcttccacggtgtgccgccaacccacgctgccagtctgcctcccacaagccacacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttagcttccacggtgtgccgccaacccacgctgccagtctgcctcccacaagccacacc 380
Query: 181 aactctccctactttctcatttgctccagaagccttcggtaaaaagtgacacaaaatgaa 240
|||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 381 -actctccctactttcttatttgctccagaagccttcggtaaaaagtgatacaaaatgaa 439
Query: 241 gggatttctccctgactttcgttccctggcacggttggtatagctcaggacctgtgcgga 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 440 gggatttctccctgactttcgttccctggcacggttggtatagcttaggacctgtgcgga 499
Query: 301 tgattcagctcttggagtcttgataagaagtaacgatagctgtagtgtgaacccgtgcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tgattcagctcttggagtcttgataagaagtaacgatagctgtagtgtgaacccgtgcta 559
Query: 361 ctgacacgctcctctcctacgattacacacacttccggattgtgcaaagcatcctctcca 420
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 560 ctgacacgctcctctcctacgattacacacactttcggattgtgcaaagcatcctctcca 619
Query: 421 gtgacagcatcgtttgtaacagcatgactggtgtgagagccttgggcgtgtggccctctc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gtgacagcatcgtttgtaacagcatgactggtgtgagagccttgggcgtgtggccctctc 679
Query: 481 ttttcacactgagttattgaacttggtgc 509
|||||||||||||||||||||||||||||
Sbjct: 680 ttttcacactgagttattgaacttggtgc 708
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 908
Length adjustment: 10
Effective length of query: 499
Effective length of database: 898
Effective search space: 448102
Effective search space used: 448102
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
