BAC Information

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BAC

Clone NameMSMg01-441C13
Chromosome5 (Build37)
Map Location 65,240,909 - 65,241,113
singlet/doubletsinglet
Overlap genenone
Upstream gene0610040J01Rik, AA536743, LOC100041636, LOC100041646, Pgm1, Tbc1d1, Ppia-ps22, LOC433894, LOC100042198, Klf3
Downstream geneTlr1, Tlr6, 9130005N14Rik, Tmem156, Klhl5, Wdr19, Rfc1, Klb, Rpl9, Lias, Ugdh, 1110003E01Rik, 4930589O11Rik, Hip2, 9030416H16Rik, 1700022K14Rik, LOC384261, B3bp, LOC100041809
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441C13.T7 (MSMg01no441_c13.b1)MSMg01-441C13.TJ (MSMg01no441_c13.g1)
ACCAG531106AG531107
length743748
length of high quality
(start - end)
206 (403 - 608)40 (128 - 167)
definitionCHROMAT_FILE: MSMg01no441_c13.b1 PHD_FILE: MSMg01no441_c13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:50 2005CHROMAT_FILE: MSMg01no441_c13.g1 PHD_FILE: MSMg01no441_c13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTGGTCACCACCGATGATTTTTGCAGGGCCTGACAAGTCAAAGAC
CGGGAAGGATATTCGACTTGGGCTCCTTAAAGTTCGCATCTAGCCACTCG
GTCGGTCACGCTATTCCTTACAAGGGAAGAGGCATCACAAGGAAACCAGC
CACTCCTTTCTCATTCCACATACCCAGGTCAGCCCTGCTCAGCCATTTGA
TGGTTATAAAAAGTGAGTTCCGATGAGTAAGGTTGAAAGCTTTTGCTTAT
TGAAAAGGAGATCTTGTTACTTAGGCTGGCTTGAGGATGTCACAGAACTT
CAGGGTAGTGGAGGAAAGTGGCTGACAAAAATCAGGTAGCTGGTAGGAGA
CAGGACCAGATGAATGCTTTTCTAATGTTTTCTGGACTAGTTACTTTTCT
CACAGGACTAAGATGGACTGCTGAAGATAGACTAATACAGCCCCACCTGT
GTGACAGAGCACTCATTTTCTCTTTCTTTGTTAGTCCCTTTCTCCTATTT
GCACGGATGCCCACTTTGAAGCTGAAAGTTTAAACTGTGATTTTTTAATT
ATGTATGCATTTAAAAATAAAACATGTAGCTTTAATGCCCTTTTCTTCCT
CTTTCCTCTGGAATCACCAAGTACCGTGGCTGGCTTGGGACCCAGCATAC
CAGGCCGGCCTTAGAATTTCCTAGAGTCCACCTGCCTCTGCTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTGTGAGAAGGACTTACAATTCATTGC
TAAAATTTTAAAAGAAATAAAACAAACATTCCTGCCACAAGTGGACTCAA
TGTCTAACAAGCACTTCTCGGGCAGCTTTGGAAGACCACCTTCCTTTAGC
TTCCACGGTGTGCCGCCAACCCACGCTGCCAGTCTGCCTCCCACAAGCCA
CACCAACTCTCCCTACTTTCTCATTTGCTCCAGAAGCCTTCGGTAAAAAG
TGACACAAAATGAAGGTATTTCTCCCTGACTTTCGTTCCCTGACACGGGT
GGTATAGCTCAGGACCTGTGCGGATGATTCAGCTCTTGGAGTCTTGATAA
GAAGTAACGATAGCTGTAGTGTGAAACCGTGCTACTGACACGCTCCTCTC
CTACGATTACACACACTTCCGGATTGTGCAAAGCATCCTCTCCAGTGACA
GCATCGTTTGAAACAGCATGACTGGTGTGAGAACCTTGCTCGAGTGGCCC
TCTCTTTTCACACTGAGTTATTGAACTTGGTGCGACAATGGTTCAGACCC
CAATTATCTTCATCTAATCCAAAATACTGGCTATTATTTTGGGGAGTTAC
TTGTGTGGCTTTACTCTAGAGAGAGAGAAGAGCTCTTCTATCCCATGGGT
TGAAAGCCTTTGCATCTACACCGCGCAAAACTTACCTACTGTCACCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_c13.b1 MSMg01no441_c13.b1 CHROMAT_FILE:
MSMg01no441_c13.b1 PHD_FILE: MSMg01no441_c13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:50 2005
         (206 letters)



>mm_chr5_65240709_65241313
          Length = 605

 Score =  375 bits (194), Expect = e-109
 Identities = 203/206 (98%), Gaps = 1/206 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaccagatgaatgcttttctaatgttttctggactagttacttttctcacaggactaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ggaccagatgaatgcttttctaatgttttctggactagttacttttctcacaggactaag 346

                                                                       
Query: 61  atggactgctgaagatagactaatacagccccacctgtgtgacagagcactcattttctc 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 345 atggactgctgaagatagactaatacagccccacctgggtgacagagcactcattttttc 286

                                                                       
Query: 121 tttctttgttagtccctttctcctatttgcacggatgcccactttgaagctgaaagttta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tttctttgttagtccctttctcctatttgcacggatgcccactttgaagctgaaagttta 226

                                     
Query: 181 aactgtgattttttaattatgtatgc 206
           |||||||| |||||||||||||||||
Sbjct: 225 aactgtga-tttttaattatgtatgc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 605
Length adjustment: 8
Effective length of query: 198
Effective length of database: 597
Effective search space:   118206
Effective search space used:   118206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)