BAC Information

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BAC

Clone NameMSMg01-441C14
Chromosome5 (Build37)
Map Location 13,838,434 - 13,838,985
singlet/doubletsinglet
Overlap geneLOC668085
Upstream geneLOC433845, LOC625989, LOC670717, Sema3a, LOC208055, LOC626053, Speer3, EG626067
Downstream geneLOC384149, LOC384148, Sema3e, LOC100042957, Pclo
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441C14.T7 (MSMg01no441_c14.b1)MSMg01-441C14.TJ (MSMg01no441_c14.g1)
ACCAG531108AG531109
length748746
length of high quality
(start - end)
597 (67 - 663)557 (74 - 630)
definitionCHROMAT_FILE: MSMg01no441_c14.b1 PHD_FILE: MSMg01no441_c14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:50 2005CHROMAT_FILE: MSMg01no441_c14.g1 PHD_FILE: MSMg01no441_c14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:07:50 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAACTTACGAATACCGAATGGCTGAGAAGCACTTGAAAAAATGT
TCAGCATCCTTAATCGTCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCATACTAGTCAGAATGGCTAGGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GATTGCAAGCTTGTAAAACCACTCTGGAAATCAATCTGGTGGTTCCTCAG
AAAACTGCACATAGTACTACTGGCTGATCCAGCAATACCTCTCCTGGGCA
TATACCCAGAAGATAGTAATAAGGACACATGCTCCACTATGTTCATAGCA
GCCCCATTTATAATAGCCAGAAGCTAGAAAGAACCCAGTTGTCCTTCAAC
AGAGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACT
CAGCTATTAAAAACAATGATTTTATGAAATTCTTAGACAAATGGATGTAT
CTGGAGGATATCATCCTGAGTGAGGTAACTCAATCATAAAAGAAGTCACT
TGATATGCACTCACTGATAAGTGGATATTACCCCAGAAACCTAGAATACC
CAAGATACAATTTGCAAAACACTAGAAAATCACGAAGAAGGAAGACCTAA
GTGTGGATACTTCATTCCTCCTTAGAACAGGAACAAAATACCCATGGG
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGGTCTTTTAGGTAGGGATGAGCTGCC
AGAATCTGGTCGATCATCAGTTTTTGCTCAGAGTCAGGAAAGATGTTCAG
CAACACCTCCCTCAGCTCGCTTGTCTCTGCAGAAGATCTCTGGGCCAGCT
CAGAAAGGTTCTGCTGCATTCTTGGAAGGGTGGCCATGGATGTGGAATGG
GGCTGCTGAGGAAGCCAAGGGTTGGAAGCTGCTCTATGGATCCAGGGTGG
AGCCTCGTGGCTTGTGTCTTCTCCCTGGGTGTTGTGGCTCCAGAAGCCAG
GGCCAGATGTGTCCATACTTGGTTGGGCAATGATTCTTGGATGAATGTCC
CTAAGAAAGGTCTCTTTTTGAAGAAATTCATCTAGCCGAGGTCCATCCCA
GAGGTTTCTTCCCAGAGGGTCATTAGGAGCCATAAATATGTCCCCTACGA
AAGTGTATGGAAGCAGCCTTGTTTTACTAATTTCTCTCCAGGACACTGAC
TCCATCACAAACTTTCTCAAGTTATCATTTGTTACAATTATACCCCCAGT
CTTGTCTGCTAAGTGAAGCAAGAACCTGTCTTCATGAGAAGCAATTCTTT
GCCCTAAGACCTTCCGGGCAGGAGTTAAAGCTTATATCCCAAGGTCCTGG
AGTTGGCTTATTAAGTGCTGTTCTGTGCCCTTATGATCCAGACTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_c14.g1 MSMg01no441_c14.g1 CHROMAT_FILE:
MSMg01no441_c14.g1 PHD_FILE: MSMg01no441_c14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:50 2005
         (557 letters)



>mm_chr5_13838234_13839185
          Length = 952

 Score =  928 bits (480), Expect = 0.0
 Identities = 537/560 (95%), Gaps = 11/560 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggtcttttaggtagggatgagctgccagaatctggtcgatcatcagtttttgctcagag 60
           ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct: 201 aggtcttttaggtagggatgagctgccagaatctggtcgatcatcggtttttgctcag-g 259

                                                                       
Query: 61  -tcaggaaagatgttcagcaacacctccctcagctcgcttgtctctgcagaagatctctg 119
            |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctcagaaaagatgttcagcaacacctccctcagctcgcttgtctctgcagaagatctctg 319

                                                                       
Query: 120 ggccagctcagaaaggttctgctgcattcttggaagggtggccatggatgtggaatgggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ggccagctcagaaaggttctgctgcattcttggaagggtggccatggatgtggaatgggg 379

                                                                       
Query: 180 ctgctgaggaagccaagggttggaagctgctctatggatccagggtggagcctcgtggct 239
           |||||||||     ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgctgagg-----aagggttggaagctgctctatggatccagggtggagcctcgtggct 434

                                                                       
Query: 240 tgtgtctt--ctccctgggtgttgtggctccagaagccagggccagatgtgtccatactt 297
           ||||  ||  ||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 435 tgtg--ttgactccctgggtgttgtggctccggaagccagggccagatgtgtccacactt 492

                                                                       
Query: 298 ggttgggcaatgattcttggatgaatgtccctaagaaaggtctctttttgaagaaattca 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggttgggcaatgattcttggatgaatgtccctaagaaaggtctctttttgaagaaattca 552

                                                                       
Query: 358 tctagccgaggtccatcccagaggtttcttcccagagggtcattaggagccataaatatg 417
           ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 553 tctagccgaggtccatcccagaggtttcttcccagagggtcatcaggaaccataaatatg 612

                                                                       
Query: 418 tcccctacgaaagtgtatggaagcagccttgttttactaatttctctccaggacactgac 477
           ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 613 tcccccacgaaagtgtacggaagcagtcttgttttactaatttctctccaggacactgac 672

                                                                       
Query: 478 tccatcacaaactttctcaagttatcatttgttacaattatacccccagtcttgtctgct 537
           ||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 tctgtcacaaactctctcaagttatcatttgttacaattatacccccagtcttgtctgct 732

                               
Query: 538 aagtgaagcaagaacctgtc 557
           ||||||||||||||||||||
Sbjct: 733 aagtgaagcaagaacctgtc 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 557
Length of database: 952
Length adjustment: 10
Effective length of query: 547
Effective length of database: 942
Effective search space:   515274
Effective search space used:   515274
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)