Query= MSMg01no441_l16.b1 MSMg01no441_l16.b1 CHROMAT_FILE:
MSMg01no441_l16.b1 PHD_FILE: MSMg01no441_l16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:37 2005
(330 letters)
>mm_chr5_141191804_141192533
Length = 730
Score = 511 bits (264), Expect = e-149
Identities = 312/350 (89%), Gaps = 35/350 (10%)
Strand = Plus / Minus
Query: 1 gcatgctgcagacagcaggaatgccaactagaggccagccagctcgggcaacagagtaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 gcatgctgcagacagcaggaatgccaactagaggccagccagctcgggcaacagagtaac 427
Query: 61 atcctgtctcagaaatataaaaacaaagccattgagaggaaagaactccctaggacactg 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 atcctgtctcaaaaatataaaaacaaagccattgagaggaaagaactccctaggacactg 367
Query: 121 ggctgtatgtctgtcatgcccctcctgcagctccatccctggctcctctatagcttcaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggctgtatgtctgtcatgcccctcctgcagctccatccctggctcctctatagcttcaga 307
Query: 181 agtctgctgtgggtcggaccaatg----------------------------------aa 206
|||||||||||||||||||||||| ||
Sbjct: 306 agtctgctgtgggtcggaccaatgctgcttatactaaatgctaagttgggtcccccaaaa 247
Query: 207 ctgccccaaaggcagtgtaagacaccagagaaccctgcccccagttttattctgattggt 266
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 246 ctgccccaaaggcagtgtaagacaccagagaaccctgcccccag-ttaattctgattggt 188
Query: 267 aaaggaagatgccagcagccaatggctgggaagaagaggcacaggcgggg 316
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 187 aaaggaagatgccagcagccaatggctgggaagaagagacacaggcgggg 138
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space: 231441
Effective search space used: 231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_l16.g1 MSMg01no441_l16.g1 CHROMAT_FILE:
MSMg01no441_l16.g1 PHD_FILE: MSMg01no441_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:37 2005
(479 letters)
>mm_chr5_140990765_140991643
Length = 879
Score = 799 bits (413), Expect = 0.0
Identities = 454/477 (95%), Gaps = 17/477 (3%)
Strand = Plus / Plus
Query: 1 cttcccgcagggcttctgtagccccaggggctgcgagagaggactgtcttctgacatacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 cttcccgcagggcttctgtagccccaggggctgcgagagaggactgtcttctgacatacc 243
Query: 61 tgtgtcagacagtggctggttgggcc----tccgtccttcctt-----cct--------t 103
|||||||||||||||||||||||||| ||||||||||||| ||| |
Sbjct: 244 tgtgtcagacagtggctggttgggcctccttccgtccttccttctctccctcccccccct 303
Query: 104 ccctccctctctccctccctccctccctcccagcaaagcacattgctgtctgtcccttca 163
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 ccctccctccctccctccctccctccctcccagcaaagcacattgctgtctgtcccttca 363
Query: 164 cacttcctatgcatttcccttgaagtttctgactgtatgattagacaaaggagcaaaccc 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cacttcctatgcatttcccttgaagtttctgactgtatgattagacaaaggagcaaaccc 423
Query: 224 cccagtccacgtgacaagacttatgctggtggttaggtagcattctgcagagaaacagcc 283
|||||||||||||||||| | |||||||||||||||||||||||||| || ||||||||
Sbjct: 424 cccagtccacgtgacaaggcaaatgctggtggttaggtagcattctgcggacaaacagcc 483
Query: 284 tgtgcaaggagcaagtgtgtacaaggggaatgagtgtgcagacctggctaatgtaagccc 343
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 tgtgcaaggagcaagtgtgtacaaggggaatgagtgtgcagacctggctaatgtaagccc 543
Query: 344 agcctggtatgcacgccagtgatctcagctacttgagagcctgaggctggaggatggcac 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 agcctggtatgcacgccagtgatctcagctacttgagagcctgaggctggaggatggcac 603
Query: 404 attccaggactgcctggctacttatcaagtccaaagcaatttaccagactttgtatc 460
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 attccaggactgcctggctacttatcaagtccaaagcaatttaccagactttgtatc 660
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
