TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACATGTTTTCTACCTAGCAAAGCAAGAGTGTACTACTGTATAAGT
AAATAAGAAAGATATCATTTTTACAGCAGTAAGATAAGTGCTATATAATT
TAATTGTTGAATCTCACTGAAAATTGGATTGTTTATATTTTTTACTCCAT
CTGAATTTTTCCCAGATGTATTGTTTATTTTAAGTGCAAAAGCTCAAATT
AACTACAAAGTTTGGGGAATAATAGAGTGAAGTAATGGGTGAGAATAACC
ACATATTGAATTAAATATTATTTTATGCATTGGACTATGAGTTCTCTAAA
TTGTCTCTAAAATGGCCATAGTTTACCATCATTCAGAATTTCACTAAGCT
CTGGACGCTTTCAATATCTCATTTTCTTCCTGATGCCTTCCAGAGGTCAT
AATGTTCAAATTCTAGAACATGTACAGATTATAAAGAGACCCCCCCCCAA
AGCAATGCTGGTGATTGCCATTGCCTGTGGTTGCTCCCAGATCCTGAAGG
GAAGACTCTCTTACTGAGGGCATGATGCACTTCAGATACAGGACTGGAGG
AATTCATCTGGAACTGACATGGAAATGGCATCCCTGAGGAACAGTTCTCC
GAGTGCTGGAAAAACTGTGCAAGCTGCCCGGGNTAAAAAGCTATCAGTAA
TCCTACCCCGCTGCAAAGTTTATTAACATTACGCCCTCCACCGTACGGAA
AGATTTTCTGAAAGGTCC

CAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTATGTCTTTAGGAAACTCGGGGACA
ATAATGGAACAGAATGAAGGAAAGGCTATCAAGAGATTGGCCCAACTTGG
GACCCATCCTATGCACAGACACCAAACCCTAACATTATTACAGATGCAAT
GTTGTTCTTGCAGACAGAAGCCTAGCGTGGCTGTCTACTGTTGGGAGCCG
CCCCCACATTCGCCGTCACAAGATGGCGCTGACATCCTGTGTTCTAAGTG
GTAAACAAATAATCTGTTTATGTGCCAAGGGTATTTTACGACTACTTGTA
CTCTGCCTTTCCCGTGAACGTCAGCTCGGCCATGGGCTGCAGCCAATCAG
GGAGTGATGCGTCCTAGGCGAAATATAACTCTCCTAAATAGGGAAGGGGT
TTCGGTTTCATTATTGGGGTGGCTTTCGCTTTTGGGGCTGGGGGTTTGCG
CTCCTGGCTCCTGAAGATGTAAGCAATAAAGTTTTGCCGCAGAAGATTCT
GGTTTGTTGTGTTCTTTCCTGGNCGGGCACGCGAACGCTATTAAGAATTG
GTGCTGAAACCCGGGACGAAGAAACCCCGGGAAGAGAAAACCTGGGACGA
AAATTACATCTCCGGGCGAAGGAAAATCCCTCATTCCAAACCCGAAATGC
GGGTCGCGGTAATAAAGTTCCCCTAAAAACGAATGTTAAAAAGATCCACC
GCTTGAATTCCA

Query= MSMg01no441_o16.b1 MSMg01no441_o16.b1 CHROMAT_FILE:
MSMg01no441_o16.b1 PHD_FILE: MSMg01no441_o16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:53 2005
         (513 letters)



>mm_chr5_98791643_98792555
          Length = 913

 Score =  965 bits (499), Expect = 0.0
 Identities = 509/513 (99%), Gaps = 2/513 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaaagcaagagtgtactactgtataagtaaataagaaagatatcatttttacagcagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 gcaaagcaagagtgtactactgtataagtaaataagaaagatatcatttttacagcagta 553

                                                                       
Query: 61  agataagtgctatataatttaattgttgaatctcactgaaaattggattgtttatatttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 agataagtgctatataatttaattgttgaatctcactgaaaattggattgtttatatttt 493

                                                                       
Query: 121 ttactccatctgaatttttcccagatgtattgtttattttaagtgcaaaagctcaaatta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 ttactccatctgaatttttcccagatgtattgtttattttaagtgcaaaagctcaaatta 433

                                                                       
Query: 181 actacaaagtttggggaataatagagtgaagtaatgggtgagaataaccacatattgaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 actacaaagtttggggaataatagagtgaagtaatgggtgagaataaccacatattgaat 373

                                                                       
Query: 241 taaatattattttatgcattggactatgagttctctaaattgtctctaaaatggccatag 300
           ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 372 taaatattaatttatgcattggactatgagtactctaaattgtctctaaaatggccatag 313

                                                                       
Query: 301 tttaccatcattcagaatttcactaagctctggacgctttcaatatctcattttcttcct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 tttaccatcattcagaatttcactaagctctggacgctttcaatatctcattttcttcct 253

                                                                       
Query: 361 gatgccttccagaggtcataatgttcaaattctagaacatgtacagattataaagagacc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 252 gatgccttccagaggtcataatgttcaaattctagaacatgtacagattataaagaga-- 195

                                                                       
Query: 421 cccccccaaagcaatgctggtgattgccattgcctgtggttgctcccagatcctgaaggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 194 cccccccaaagcaatgctggtgattgccattgcctgtggttgctcccagatcctgaaggg 135

                                            
Query: 481 aagactctcttactgagggcatgatgcacttca 513
           |||||||||||||||||||||||||||||||||
Sbjct: 134 aagactctcttactgagggcatgatgcacttca 102


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)