BAC Information

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BAC

Clone NameMSMg01-442E08
Chromosome5 (Build37)
Map Location 40,405,047 - 40,405,279
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384174, Hs3st1, EG665839
Downstream geneLOC100040502
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442E08.T7 (MSMg01no442_e08.b1)MSMg01-442E08.TJ (MSMg01no442_e08.g1)
ACCAG531956AG531957
length793812
length of high quality
(start - end)
270 (50 - 319)233 (81 - 313)
definitionCHROMAT_FILE: MSMg01no442_e08.b1 PHD_FILE: MSMg01no442_e08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:21 2005CHROMAT_FILE: MSMg01no442_e08.g1 PHD_FILE: MSMg01no442_e08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCTTCAAATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTCCGCTCTGTACCCCATTTTTTAATGAGGTTATTTG
AATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATATATTGGATATACAT
GTTTACTATGTTCATAGCATCCTTATTTATAATGGCCAGAAGCTGGAAAG
AATCCAGATGTCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATT
TAACAATGGAGTACTATTCAGCTATTAAAAACAATGAATTTATGAAATTC
TTAGGCAAATGATGGATCTGGTTTTTTATCATCCTGAATGAGGTAACCCA
ATCTCAAAAGATGTCACTTGATATGCACTCACTGATAAGTATATATTAGC
CCAGAAACTTAGAATACCCAATATACTACTTGCTTAACACAAGATAATCC
TGAATAAGGAAGACCAACGTGTGGATACTTCATTCCTCCTCTAGAATATG
CATCATAATACCCTTGGCATAAGTACCGAGACTATTTTTGTAGCTGTACT
TATTGTTTGAACCTTCCCCTACATTACCCTCTTTTGTTTATTTTCTCTTC
TAATCACTCCCCCCATGGTTCATACTTATTGTTCATGGCCCCCTCCTCTT
CCCTTCTATTTACACCCACCTTTTTTCTTCTCACTCTCTTTCTTTTCTTT
TTTTTTGTTTTCTCCTCCCTACCTCCATTTCTTTATTCTTCTTTCTCCCC
CCCTCCTATCTTTTTTCTCCCTTCTCTCTCTTTGCCTCATCTG
TTGCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTGGTCTTCTAACCCCCA
ATTTTCCAAATAGGCTCAAGTCACTATTTATTCTGTAACAGCATCTTCTC
CACTTATACAGTGTACTGCTCTCAAAACATATATCTTTATCTCTCCCAGA
TAATTTAGGGAAGCCTAGGACTTATAAATGACAGGAAAGATAAAATGGAG
TGGGAAGTACTGGTTTTGACTTCCTGATGTTATCATGTATGAACTGTGTG
ACCTCAGATAATGCGGTTGACTTTTTTTTTATTTAGATAAATCCTTTTAC
CATGCAGTTAGCATTTCCCCTCTCCCGAGAGTTACCTTAAAGATTAAGAA
GAATCTCATGTGTTGATCTCACTCTCTGGTCGCATTTAGCATATAATAAT
CGCTGTGTTATTTTTGCGCCCTTTTTTTTTCCGTTTTTTGTCATTTGTTT
TCGTTTTTTATGTCCCTTTTCTTTTCTTCCCCCCCTCTTTTTATCCCCTT
TCCTTGTTCTTTCTTTTTTTTTTTGTTTGTCCTCCCTTTTTTTTCTTTAT
CTTTTTCTCCTTCCTTTCCTTTTTTCTTTTCCATCCCTTCTCATCTGTTC
ATGTCTCCTACGTCCTTTCTTCTTCTTTTTTGCCGCCCGCCTTCTATTTC
ATTTACTCTACCCCTCCCCCTTTTTTTCCCTCCCTCTCCCTCCTTTTATT
TTTTCTCCCCACTGTATTTCCTCTTCTTTCCTTTACGTTTACTGACCAGT
GTCGCTCCCGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_e08.g1 MSMg01no442_e08.g1 CHROMAT_FILE:
MSMg01no442_e08.g1 PHD_FILE: MSMg01no442_e08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:22 2005
         (233 letters)



>mm_chr5_40404847_40405479
          Length = 633

 Score =  435 bits (225), Expect = e-126
 Identities = 231/233 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttggtcttctaacccccaattttccaaataggctcaagtcactatttattctgtaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 atttggtcttctaacccccaattttccaaataggctcaagtcactatttattctgtaaca 374

                                                                       
Query: 61  gcatcttctccacttatacagtgtactgctctcaaaacatatatctttatctctcccaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcatcttctccacttatacagtgtactgctctcaaaacatatatctttatctctcccaga 314

                                                                       
Query: 121 taatttagggaagcctaggacttataaatgacaggaaagataaaatggagtgggaagtac 180
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 313 taatttagggacgcctaggacttataaatgacaggaaagataaaatggagtggaaagtac 254

                                                                
Query: 181 tggttttgacttcctgatgttatcatgtatgaactgtgtgacctcagataatg 233
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tggttttgacttcctgatgttatcatgtatgaactgtgtgacctcagataatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 233
Length of database: 633
Length adjustment: 9
Effective length of query: 224
Effective length of database: 624
Effective search space:   139776
Effective search space used:   139776
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)