BAC Information

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BAC

Clone NameMSMg01-442E15
Chromosome5 (Build37)
Map Location 15,196,021 - 15,196,254
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442E15.T7 (MSMg01no442_e15.b1)MSMg01-442E15.TJ (MSMg01no442_e15.g1)
ACCAG531970AG531971
length798798
length of high quality
(start - end)
427 (46 - 472)237 (77 - 313)
definitionCHROMAT_FILE: MSMg01no442_e15.b1 PHD_FILE: MSMg01no442_e15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:23 2005CHROMAT_FILE: MSMg01no442_e15.g1 PHD_FILE: MSMg01no442_e15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:09:23 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
NCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGACACTATCCATGCAGTATGGCAGTGATTACATCATCAAGTGT
GTGTCCATGGGGTAAGTGACATTATCCACACACAAAAGATCATCATTGCC
TTGTATACCCCCTAGGTGGCTATGGCTTTACTATGTAGCCTTGGCTGCCT
GGAACTTACAAAGATCCATCTCTGGCTGTGAATTCTAGGTCTGCAGCAGG
GGACAGAACACCTGAATAAGGAAGATGGTCTCAAGAGTACTATGGGATTG
CAAGCTTGTACAACCACTCTGTATTTCAGTCTGGCGGTTCCTCAGAAAAT
TGGACATAGTACTACTTGAACGATTCCTTAAATGCAGACCCTATGTTGAT
TGATCAGAACCATAGCTCAAGTTTTGGGGGTTGAACTAGGGCCCCCAAAA
TCGATCTTTGTTAAGGTATGAAGACTAAACACAAAAACAACTTTTCCATG
ATCCTCACAATCACATCCTATAAAATTACATCTTTTGTTAAATTCTCCCT
TATTCTCTCTTAATGTCTATGATACTACTCCTGCGTTCTGTTTCTGATCT
AATCCCCTTCCTCCAAACAACAGTGCCCCCTTGTCCCCTTTACTTTTACG
GGTTCTCCCATACTAAGAGTATCTATCTCTTTTTTTTTTTATTCCCACCA
AATTGTCCTTCACACCCCATCCCGACATTTGTATTTCTTCTATATTAACA
CCCGCTCCGCTTTTATATCTCTACTTTTTTAGCCAGCATACTTATATN
CCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTCTGCTCATCACAAGCCGTCAC
TAACAGAATGTGGGTGGTGAGAATTAGTGCTTATTTGTTGATGAAGAAGT
AAGAACATACATACATCAGGGACCACATTTTGAATGTGTTTTGTGGTACA
GCCTAGGTTTTGGGTGTTTATGAACAGTATACTTGAGGAAACCTTGGAAT
TTTCTGTTTTATATGCTCTACATTAAAATATAACTTTTACGTTTGCTACA
TTTACATGACAAACAAACCCCTTAGATGCTTTTACTGCTCTATAACACTG
CTGTTAGNGATATCCTTTTTCACTGCCAGGATGTACACAGAGATGTTCCT
ACCTTATCACCTTATCTCCCTCTATTTTATAGACTGCCCCCACTTCTGTC
CTGATACTTTTACATTATCTCTGCCTCGTTTCTATTTGCTACTCCCCTCT
CTCTCTTCCTCTATCTATCCCCCCCCCCTCTCTTCCTCCCCTCCCCACTT
TTCTTTCCCTTTCTTCTTTCACTCTCCCTTCTTCCCCCCTTCTCTCTTTC
CCTTTTCCTTCCTTTCTGATACTTTTTCTCCCTATTTTTCCCCCTCCCCT
CTCCCTCTCACTTTTTTCATTTTTTTTCTTTTCTCTTCCCCCCCCCTCCC
CCCCTCCTCTCCTCCTTCTTTCTCTATCCCTCTCTTCCCCTCTTCCCTTC
TCTATTTCCCTTTCCATTCAATCTCTCGCTCTCCCTTCTCTCCCTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_e15.g1 MSMg01no442_e15.g1 CHROMAT_FILE:
MSMg01no442_e15.g1 PHD_FILE: MSMg01no442_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:09:23 2005
         (237 letters)



>mm_chr5_15195821_15196457
          Length = 637

 Score =  391 bits (202), Expect = e-113
 Identities = 226/234 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaattagtgcttattt 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 434 tttctgctcatcacaagccgtcactaacagaatgtgggtggtgagaactagtgcttattt 375

                                                                       
Query: 61  gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gttgatgaagaagtaagaacatacatacatcagggaccacattttgaatgtgttttgtgg 315

                                                                       
Query: 121 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattttctg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |
Sbjct: 314 tacagcctaggttttgggtgtttatgaacagtatacttgaggaaaccttggaattgacag 255

                                                                 
Query: 181 ttttatatgctctacattaaaatataacttttacgtttgctacatttacatgac 234
            ||||||||||||||||||||||||||||||||  |||| ||||||||||||||
Sbjct: 254 ctttatatgctctacattaaaatataacttttatatttgttacatttacatgac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)