BAC Information

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BAC

Clone NameMSMg01-442O02
Chromosome5 (Build37)
Map Location 144,363,884 - 144,364,007
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100038984, LOC100042525, LOC100038888, Zfp469, LOC666788, Fbxl18, D430018E03Rik, LOC100042558, Actb, Fscn1, 2810055G22Rik, LOC667809, Olfr718-ps1, LOC640324, LOC100042605, Rbak, 4933411G11Rik, Spdyb, Zfp12, Zfp316, Gm792, E130309D02Rik, Zdhhc4, Grid2ip, Kdelr2, LOC231869, LOC670671, Daglb, Rac1, 2810453I06Rik
Downstream genePscd3, Usp42, Eif2ak1, 4921520G13Rik, Jtv1, Pms2, 4930526H21Rik, AU022870, Ocm, Lmtk2, Bhlhb8, 2210010N04Rik, Bri3, Baiap2l1, 4930568B11Rik, Nptx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442O02.T7 (MSMg01no442_o02.b1)MSMg01-442O02.TJ (MSMg01no442_o02.g1)
ACCAG532419AG532420
length864782
length of high quality
(start - end)
124 (79 - 202)339 (83 - 421)
definitionCHROMAT_FILE: MSMg01no442_o02.b1 PHD_FILE: MSMg01no442_o02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:16 2005CHROMAT_FILE: MSMg01no442_o02.g1 PHD_FILE: MSMg01no442_o02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GACGCCCCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATAGACGAT
CCGCGGAATTCAAGTTTATCTACAGCCAGAAAGCTGCTCTTAAATTTCCA
TTTCATAATGTGAGTCACAGACGATATAGAACCTTTAGAAGTTGTGGTGG
TGAGGGGCTGCGGGAATAGTTAGATGGGTAAAGAACTTGTTGCTAGGCCC
AGATCTCCAGCACCGCTGCAAAAGCCAGGGATGCTGCCAGCCCCCTGCAC
TCCCTTTTTTGGTTCCTGACACACTGGGAGAGACAGGTTATATGAGCCCG
GAAGCTCCGGCTCCCCCCCTTTTCTTGTTTTTGACCTATCCCTCCCCCCC
TCTTCGCCCTTTTTTTCTTCCTCTCCCTCCCCCTTTTGTGTTTTCTCACC
CCTCCTCTCTTCTCTCTCCCCCCCCCCTCTCCCTCTCTCTCTCGTTACTC
TTCTCCCTCTTCTTTCTCCCTTCTTTCTTCCCTTTTTACCCTCCTTCTTT
TCCCCCCCTCTTCCTTTCCCCTCTTTCTTCTCTTTTCCCCTTTTTCGCCC
CCCCCCCCTTCTCCCTGTTTTTTCCTCCTCCCCCTCCCTATTTTCCTCCT
CTTTTTCCTCCCTTTCTCTCTTTGTCTTCTCTCCCCTCTCCCTTTCTCTC
TGCCCCTTCCCTCCACCTCCCGATATTCCCGCTTCCCTTCGCAGCACGCC
CTCCCCCCCCCCTTTTCTTTTTCTTCTCCCTCTTTTCTTCCCCCCCCTCT
CCCCTCTCTCTCCTCCTTTTTTTTTTGTCCCTCCCCTCACCCCCTTTAAT
CCTTCCTCTCTTCTACCGCACCCTCTCTCCCTTTTCTCCCTCTTCTTGTT
CTCTTCCTCCCCTT
ATGGTCGAAGGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTGGGAGAATGAATAGA
AGGAAAGATAACTAAAGCACAGGCCATCTTTAGGTCAATTCGATCTATAT
GGTCATTTTGTAATCTCTTTTTTATTAGAGCCAATTCCTTTTCAGGTTCA
GCTGATAATCTTCTTGGACTATTTAATTCTTTATCACTTTGCAGAGTTTG
AAATAAATTACTCGACTCTTCAATGGTCAAACCAATTGTAAGCTGAAGCC
AGTTAATATCTCCCCATAATTTTTGATTTTCATTAAGAGTATTTAACTGG
TCTCTCCTGATTTCCACCTTTTGCAGTCAAATTTCCTGCAGATTTATCTT
ATATCCTAGGAAATTAACAGAATTGTCTCTTTGCTTTTCAGTTTTTATTT
GTATTCCTCATTCAAGCCAAATAAAATTGTCTTTTATTCCTCATCCTCAT
ATTTTGTTCCTGAGGCCGTATCTATTATACTCCCCTTTTTTTATTCCCTT
TCTTATCTCCTGCTATTTTATTTTTTTTCCACTACTAGTTTCTCTTCCCC
TTTTTCCTTCCTTTCCTTTTTCCTCCCCCTCTCGTTTTTTATTTTTTCCC
CTTTCTTTTTCTTCCTTTTCTTTTTCCCCTCCTTTTTCTTTTCCTCGCTT
TCTCTTTTTTTCCCCCTCCCCTCCATTCTTTTTTTCCCCCCTTTCTCCCC
TCAACCTTTTTATCTTTTCTTTTTCTCACTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_o02.b1 MSMg01no442_o02.b1 CHROMAT_FILE:
MSMg01no442_o02.b1 PHD_FILE: MSMg01no442_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:16 2005
         (124 letters)



>mm_chr5_144363684_144364207
          Length = 524

 Score =  232 bits (120), Expect = 5e-66
 Identities = 123/124 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagctgctcttaaatttccatttcataatgtgagtcacagacgatatagaacctttag 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 324 gaaagctgctcttaaatttccatttcataatgtgggtcacagacgatatagaacctttag 265

                                                                       
Query: 61  aagttgtggtggtgaggggctgcgggaatagttagatgggtaaagaacttgttgctaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aagttgtggtggtgaggggctgcgggaatagttagatgggtaaagaacttgttgctaggc 205

               
Query: 121 ccag 124
           ||||
Sbjct: 204 ccag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)