BAC Information

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BAC

Clone NameMSMg01-443B23
Chromosome5 (Build37)
Map Location 80,330,781 - 80,331,169
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039506, LOC100039384
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443B23.T7 (MSMg01no443_b23.b1)MSMg01-443B23.TJ (MSMg01no443_b23.g1)
ACCAG532604AG532605
length755764
length of high quality
(start - end)		403 (48 - 450)388 (78 - 465)
definitionCHROMAT_FILE: MSMg01no443_b23.b1 PHD_FILE: MSMg01no443_b23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:37 2005CHROMAT_FILE: MSMg01no443_b23.g1 PHD_FILE: MSMg01no443_b23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNTTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCCTCTTTTCTTTTCTGTATCCCCTTGATCTCCTTTTGTTGTCGA
ATGGCTCTGGTTAATACTTCAAGTACTATGTTGAAAAGGTAGGGAGAAAG
TGGGCAGCCTTGTCTAGTCCCTGATGTTAGTGGGATTGCTTCCAGCTTCT
CTCCATTTACTTTGATGTTGTCTACTGGTTTGCTGTAGATTGCTTTTATC
ATGTTTAGGTATGGGCCTTGAATTCCTGATCTTTCCAAAACTTTTATCAT
GAATGGGTGTTGAATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGA
TCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATG
GATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTG
GGCAGGGAGGATGATTGCTTTAATGTGTTCTTGGATTCGCTTACCGAGAA
ATTTTATGAGGATTTTTGCCCCTATTTTCCTAAGAAAAATTGGCCTGAAA
CTCCCTCTTCTTTTTTGGGNCCTTCTGTGTTTTTCCCCCCCTATCTTTTT
TTGTTTCCCAATATACCTGGGTTTTCCACCCCTCCCTTTTCTCTGCCGAC
TTTTCTCTCCCTAATCCCCGTTTCTTCTCTCTTTGCTATTCTTTTTTATT
TTGCCCTCCTCCCTATTGTTTTCTCTTTCCCCTTCTTTTTCCTCCTTTAA
TCCCC

TTTCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTAGATTGATAACAGTTACTAG
CAAAGGTAACCACTCTTCTGGATCCCAGGTACATCAGCTTCATCTGTGTC
AACAGCATATAGAATATTTTCTATGATTTCACATTAAGTCTCTTTTTAAT
ACCTCATATGTTTTTTGTTTCCCTTTTTCTTTTTCTAACTAATATGTACT
GTTTAATGTTTTTTAAATAACAGTTAAGGTCATGAACATTTATTGAAGTT
TATATTTTTCTCACTGGTCATATTTTTCTCACTAAATTCCATCAACATCT
TATAAATCAAAAGAAATAAACTTTCTCTACTATTCTGTTTTGAGTTTTGT
CTATCTTGTCTATAAAGAGTAACTTAAATTCACAGACTCGAACTTTTTGT
GAATTTATCAGATTCTTCTAACTAGAATGTTTATATTCCCAAACTATTAT
TTCCCCACACGACATACTTTTTTGTTAGCATGCCCATGTACACCCCGAGG
GGATGGGTAAATCTATGTTAACAAGAACGGATGTAAGTTTGTGTCGACCT
TTTCCCTAATGCATTTGTTTCCCCCCCCCTTATTAATATCCCTCGCTCCG
CTTATTCCCTTTTATATCTCTTTTCCCTTTTACCGGTTCTGTCACGCTCT
CCCCTTTCCCCTCCTCTTTTCCATTCCCGTTTTTTCTCCCTTTCCTCCCT
CTTTTAACCTTCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_b23.g1 MSMg01no443_b23.g1 CHROMAT_FILE:
MSMg01no443_b23.g1 PHD_FILE: MSMg01no443_b23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:37 2005
         (388 letters)



>mm_chr5_80330581_80331369
          Length = 789

 Score =  729 bits (377), Expect = 0.0
 Identities = 386/389 (99%), Gaps = 1/389 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttagattgataacagttactagcaaaggtaaccactcttctggatcccaggtacatcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagattgataacagttactagcaaaggtaaccactcttctggatcccaggtacatcag 260

                                                                       
Query: 61  cttcatctgtgtcaacagcatatagaatattttctatgatttcacattaagtctcttttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttcatctgtgtcaacagcatatagaatattttctatgatttcacattaagtctcttttt 320

                                                                       
Query: 121 aatacctcatatgtttttt-gtttccctttttctttttctaactaatatgtactgtttaa 179
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatacctcatatgtttttttgtttccctttttctttttctaactaatatgtactgtttaa 380

                                                                       
Query: 180 tgttttttaaataacagttaaggtcatgaacatttattgaagtttatatttttctcactg 239
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgttttttaaataacagttaagttcatgaacatttattgaagtttatatttttctcactg 440

                                                                       
Query: 240 gtcatatttttctcactaaattccatcaacatcttataaatcaaaagaaataaactttct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcatatttttctcactaaattccatcaacatcttataaatcaaaagaaataaactttct 500

                                                                       
Query: 300 ctactattctgttttgagttttgtctatcttgtctataaagagtaacttaaattcacaga 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctactattctgttttgagttttgtctatcttgtctataaagagtaacttaaattcacaga 560

                                        
Query: 360 ctcgaactttttgtgaatttatcagattc 388
           || ||||||||||||||||||||||||||
Sbjct: 561 cttgaactttttgtgaatttatcagattc 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 789
Length adjustment: 9
Effective length of query: 379
Effective length of database: 780
Effective search space:   295620
Effective search space used:   295620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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