NNCCTTCXXXXXXXXXXXXXXXXXXXXXXXXXCTAAATACAGAGCACCGC
GGAATTCAGAAAATTACCAAGACTTTGATGGCTGAGCATTGGTAGTATGC
TTGCCTACCATGAATGATAGCCTATGTTCCTTCCCTAATAATAAACCATA
GAAGCATTATGACTTTTCTCTACCTTCTATTCATATGTGTATAATTTTTT
CCATCATTACTAAATAAATGGGTTAAATATTTTCCTATTGATGGTGTTTG
TAAGGCCAATACCTGATAAATAAATAGGAAAAATGTCAAACAACTGCTTT
GATTATTACTGTGTTATTGTGATACTCCATTTGTCTTAATTTGTTTTGTT
ATACCACATACCAGTGATACATGCAACAAGAAATGAGATGATGACCAGAG
AATAAAGACATGTTTCTTGGTATAAAAAAAAAGTTTGTCATGTGTCATAT
TCAAACTCTTAAACTTTGATATAATTAAAGCATGTTCTAACCAATTTTGA
TAAAGTGATCTCTTTTCAATGTCCTACTGCAGAAAGGCTATCAGGAACTT
ACTTACTTTCAAGAAGTTATGAGGCTCCCTTCTCAATTGTAGAATGTACC
TGGTGACTGTTGCCTACTCCACAATTATGATTTCTGNANTCATTGCTGGT
TGCTAGTTCTTGGCACAAATGAATTGTGTGACGTGAATCTTGTAGAATAT
TTATGATTCTC

NNNNGCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTATGTGAATACCACAGTCATG
CCTAGAAAATACTGTTTCACTGTTATGTGTTTTCTTCCTCTAGTTTTAAG
ACTAACTTATATTTATTCTGAAATAAAATCACATGGCACAGACCAAGTAG
GGTAGATTATATTTATTTTCTGAAGTTATAAAAAAAATCTATCCTAAAAT
GAAAGGTATTAATTACCAAGCTCCTTTTTATGTAAGTAATTATCAATAGC
ATATTGGATTAATTTTCTATAGTTATTTTTTATAAACATATAATTGTCAC
ATAGTAGAAGTTGTTAACTACATATGATGTCCAGTTTGGCATAGAGTATA
TATCTACTTCCCAGACTCATTTGCATTACTTTGATCTGAAGTGCAGTGTG
AGACAAGTTTCCTAATGATTGACATAAAATTTAAATCTTTCTAATTGTAG
NTTTCTATCTTGGGTTTTCTCTTCTCAGGGACTGAGTTGAAAATAAGGGG
CCAGATAGTCTTGTCCCAAATATAGAACAAGAAAAAGTATCCTATGTTAT
GTGAATGGTATAACCCATTTATCAAAAAAAGAGAGGGGGGACTTGAATTT
TAAAGAAATCCTTCTTGATGTCCTGCAGGGAATTTAAAAAAAAAAAGGGG
GGGAGCAATGGAGAACTCCTTTTCCTCCTTTTAAAAA

Query= MSMg01no443_e13.b1 MSMg01no443_e13.b1 CHROMAT_FILE:
MSMg01no443_e13.b1 PHD_FILE: MSMg01no443_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:50 2005
         (308 letters)



>mm_chr5_59926370_59927077
          Length = 708

 Score =  588 bits (304), Expect = e-172
 Identities = 307/308 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tccatttgtcttaatttgttttgttataccacataccagtgatacatgcaacaagaaatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccatttgtcttaatttgttttgttataccacataccagtgatacatgcaacaagaaatg 260

                                                                       
Query: 61  agatgatgaccagagaataaagacatgtttcttggtataaaaaaaaagtttgtcatgtgt 120
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 261 agatgatgaccagagaataaagacatgtatcttggtataaaaaaaaagtttgtcatgtgt 320

                                                                       
Query: 121 catattcaaactcttaaactttgatataattaaagcatgttctaaccaattttgataaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 catattcaaactcttaaactttgatataattaaagcatgttctaaccaattttgataaag 380

                                                                       
Query: 181 tgatctcttttcaatgtcctactgcagaaaggctatcaggaacttacttactttcaagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgatctcttttcaatgtcctactgcagaaaggctatcaggaacttacttactttcaagaa 440

                                                                       
Query: 241 gttatgaggctcccttctcaattgtagaatgtacctggtgactgttgcctactccacaat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttatgaggctcccttctcaattgtagaatgtacctggtgactgttgcctactccacaat 500

                   
Query: 301 tatgattt 308
           ||||||||
Sbjct: 501 tatgattt 508


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no443_e13.g1 MSMg01no443_e13.g1 CHROMAT_FILE:
MSMg01no443_e13.g1 PHD_FILE: MSMg01no443_e13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:50 2005
         (245 letters)



>mm_chr5_60069618_60070262
          Length = 645

 Score =  466 bits (241), Expect = e-136
 Identities = 244/245 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctatgtgaataccacagtcatgcctagaaaatactgtttcactgttatgtgttttcttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctatgtgaataccacagtcatgcctagaaaatactgtttcactgttatgtgttttcttcc 386

                                                                       
Query: 61  tctagttttaagactaacttatatttattctgaaataaaatcacatggcacagaccaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tctagttttaagactaacttatatttattctgaaataaaatcacatggcacagaccaagt 326

                                                                       
Query: 121 agggtagattatatttattttctgaagttataaaaaaaatctatcctaaaatgaaaggta 180
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 325 agggtagattatatttattttctgaagttataaaaaaaatctattctaaaatgaaaggta 266

                                                                       
Query: 181 ttaattaccaagctcctttttatgtaagtaattatcaatagcatattggattaattttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttaattaccaagctcctttttatgtaagtaattatcaatagcatattggattaattttct 206

                
Query: 241 atagt 245
           |||||
Sbjct: 205 atagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)