BAC Information

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BAC

Clone NameMSMg01-443F11
Chromosome5 (Build37)
Map Location 128,026,912 - 128,027,153
singlet/doubletsinglet
Overlap geneTmem132c
Upstream geneLOC100040327
Downstream geneSlc15a4, Glt1d1, Tmem132d
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443F11.T7 (MSMg01no443_f11.b1)MSMg01-443F11.TJ (MSMg01no443_f11.g1)
ACCAG532770AG532771
length719695
length of high quality
(start - end)
245 (76 - 320)60 (236 - 295)
definitionCHROMAT_FILE: MSMg01no443_f11.b1 PHD_FILE: MSMg01no443_f11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:55 2005CHROMAT_FILE: MSMg01no443_f11.g1 PHD_FILE: MSMg01no443_f11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGACAGCGC
NGGAATCCTCCCTTAGCATCCAACTATATTTTCCTGACCATCTGTCCCCT
GCCTGAGCTCAGAAAGATTCAACCTGTCCAAGCAGACTGGTCTGGGGTGG
ACCAAGTGGACAAGAGCCAGAACAGCCTTTAGGAAGGATTCTGGCATGTA
GCCAGCCTGCCTGAAGCCCATGTCACACTTGCAAAGCTGAGTTCCTCTTA
TTGTCTGCCTTTCCCTGCCATCTCAGCAATAGGAATGACATGGAGAGACA
GTTGGGCCAAGGCTACTTTCTTACGTTAGAGTCTGTTAACGTGCAGGGTT
GGAGCAGCCTGGGTGAGCTCTGAACTTATAGCTATAAATGGAACTCATTC
TGTCTGCTGTAGGCAAGCAGCCCTCCGCAGCATGCCTCGGGATTCTCATC
TGCAAAATAGGATGCTATCAGTGTGCCAAGCCCCCACAGGGTTTCTGTAG
CAGTGGTAGGCAGGCATACTGAAAGTGGGAAATGAGATCTGAGAGCCAAT
GATCTCCTACTTGGACAGAGCTGTTTTATGATTTCCGGTGGATCCAGAAA
CAACTTTGATTCCCTATGCCTAGATTCTCTTATACTTAGCGGTTGTTTTC
TTTTTTTAAAAGAATTAGGCCCCGAGCCTGAATATTGTACTTTTCCGAAA
TTGAAATGCATTCTATGCN
NCCTCATGCACGTGAGGCAGGGGNCGGCGGGTTCGACCGGGGNGANNANA
GAAGTTACNGACCCGGGGGCNNGAANGNCAACGGCAGGGNCCNNAACCAG
TTTCCCCCCACCCCNCCCNGNGCGCNGNGNGAGAGAGAAGAGCAGACAGA
GACAGAGACAGAGGCCACAAGAGGAACCAGAACCCCGGAAGGCGAAGCCA
AAAGCGCCAAAAGCGGNCGCAAACCGTTTTATGTGTTGGGAACTGAACTC
AGCCCCTTTGTAAGCGCAGTACATGATCTTAAATACCAAGCCTTCTTTTT
TTTTTCAGACACNCAGTTAAGCAAGTTTTTCAGATTTATTTCTTACCATG
CCTCTGGGTGTTTTGCCTGCATGTATGCCTGTGCCCTGGGAGGCCACAAG
ATGTCAGATCCTGGAACTATAGCTACAGACAGCTGCGATCATCCTATGCG
GTTGCTGCCCCCCCCTCTTGGTCCTCTGCTAGAGTTGTTTTGCACTTATT
GGCTGAACCATCTTCCCAGATTCCTTTATCTTATTTTTTCACAGTTCAAG
AGTCACTTTATCGCACCCCGGTTGGTAGACCTCCTTGGCATATATCCCTA
TGTCCCCGAATCCCCCTACCCTTTCTTTTTTCTACCTGCCTTGCCCCTCC
CTGCCATTACGTTATTTCTCACTTAAGTGCGTCCTTCTCCTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_f11.b1 MSMg01no443_f11.b1 CHROMAT_FILE:
MSMg01no443_f11.b1 PHD_FILE: MSMg01no443_f11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:55 2005
         (245 letters)



>mm_chr5_128026712_128027357
          Length = 646

 Score =  383 bits (198), Expect = e-111
 Identities = 231/242 (95%), Gaps = 1/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atattttcctgaccatctgtcccctgcctgagctcagaaagattcaacctgtccaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 201 atattttcctgaccatctgtcccctgcctgagctcagaaagacacaacctgtccaagcag 260

                                                                       
Query: 61  actggtctggggtggaccaagtggacaagagccagaacagcctttaggaaggattctggc 120
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 261 actggtctggggtggaccaaatggacaagagcaagaacagcctttaggaaggattctggc 320

                                                                       
Query: 121 atgtagccagcctgcctgaagcccatgtcacacttgcaaagctg-agttcctcttattgt 179
           ||||||||| |||| |||||||||||||||||||||| |||||| ||||||||||| || 
Sbjct: 321 atgtagccaacctggctgaagcccatgtcacacttgccaagctgcagttcctcttagtgc 380

                                                                       
Query: 180 ctgcctttccctgccatctcagcaataggaatgacatggagagacagttgggccaaggct 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 381 ctgcctttccctgccatctcagcaataggaatgacatggagagacagttgggtcaaggct 440

             
Query: 240 ac 241
           ||
Sbjct: 441 ac 442


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 646
Length adjustment: 9
Effective length of query: 236
Effective length of database: 637
Effective search space:   150332
Effective search space used:   150332
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)