BAC Information

Click to search

BAC

Clone NameMSMg01-443G19
Chromosome5 (Build37)
Map Location 43,426,085 - 43,426,458
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040588, EG636612, LOC433883
Downstream geneEG665934, Cpeb2, C1qtnf7, 4833430A08Rik, 5730509K17Rik, Fbxl5, Bst1, Cd38, EG665989, EG665994, LOC100040677, EG384179, Fgfbp1, Prom1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443G19.T7 (MSMg01no443_g19.b1)MSMg01-443G19.TJ (MSMg01no443_g19.g1)
ACCAG532834AG532835
length785750
length of high quality
(start - end)
246 (74 - 319)374 (78 - 451)
definitionCHROMAT_FILE: MSMg01no443_g19.b1 PHD_FILE: MSMg01no443_g19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:01 2005CHROMAT_FILE: MSMg01no443_g19.g1 PHD_FILE: MSMg01no443_g19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NAATTAGTCCTACTGTCACTNNNCGNNTCNCTATATTTCGAGAATCCGCG
GAATTCAGACGGTTTTCCTGAAGCACGCCTTTAATCCCAGCACTCGGGAG
GCAGAGGCAGGCGGATTTCTGAGTTCAAGGCCAGCCTGGTCTACAAAGTG
AGCTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCGAAAAACCA
AAAAAAAAAAAAAAAAAAAAAAAATCCAAACCAAAATAAAACAAAACAAA
ATGATACAAAACAAAATGATGACCTGATATGGCTGTCTCCTGAGAGGCCC
TGCCAGAGCCTTAAAAACACAGAGGTGGATGTTCATAGCCAACCACTGGA
CTGAGTGCGGGGTCCCCTATAGAGGATTTAGAGAAAGGACCGAAAGAGCT
GAAGGTGTTTGCAACACCATAGGAAGAACTAATATATCAACCACCCAAAC
CCCCTAGAACTCCTTATATACTCCACCATGTCCTTGTTATGCTTCAATGG
CAGGAGCGGCCCTTGCTCCCATGAAGGTTCATTAGATGCCCCTATCCATG
CCACCTAGTTGCCACCTTTTTTTTTAATCCCACTCCTATATTTCCCTTTC
CTTATTTACCCATTCCCTTTTCTTATACTTTTAACCCTTTTTTTTAACAC
CCCCTATCTCTTTTCTTTTCTTATTCCCTCCCCCCCTTCTTCTTTTCATT
CCTCTTTTTCCCCCCTTCTTCTCCCTTATTCATTATACCCCACATTTTCT
TTCAACTAAGCGTTTACCTTTCTTTCCCTATCTCG
TACGATGCTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGCTACACTGATAGATACCC
CAAGGTCATCCGTGATTTCACTCTTCCCTAAGAAGCCTAGGCCCAGTGAT
GGGAAATTAGTAAAAGATAACTTTACCGTTCTTGGCCTATCTCAGAACAA
CTCTAAAGGTGTGATCTGCCTTTTGAATGTCTATGTGGTTGAATGAGGCT
GTCAAGCTTGTACCATCGACTTCTCCCATATTTGTTCTTATGCTATTTTC
CCTGCTCTGCAAATCTCTACCTCAAGGAAAACCTCTAATAAACATTGGTC
ATTCATTTGTTTTTCCCAGAATTGACTTTCCAGGTGATGAAACCATAAAG
TATCTTTAAGAGGAAGGGAGTAAGGGATGAGAGAGGAAGGGAGTAAAGGA
GGTACGCCCTTTTTCCTTTTTTTCTACCCCCTTTTCCTTTTTTCCTCCTC
TTTGCTTCTTTTTCCCTCTTTTCGTCTGCCTTACCTGTTTTCCCTTTTTT
AGGCATCCTTGTCTTCTTTCTCCCCCCTCTCTTTTTTTCTTTTCTCTTTC
ACCTTTCCTACCCTTTTTTCCGTTTGTGTTCCCCCCTTCTTTCCTCTTTT
TCTTTTTCCCCCCCCTTCTTTTCGCCCCCCCCCTTTTTTTTTTTTACACC
TTTTTCCCTTTATCCCTTTTTTTTCATCCTGTTTTTACCCCTTTTTTTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_g19.g1 MSMg01no443_g19.g1 CHROMAT_FILE:
MSMg01no443_g19.g1 PHD_FILE: MSMg01no443_g19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:01 2005
         (374 letters)



>mm_chr5_43425885_43426658
          Length = 774

 Score =  586 bits (303), Expect = e-172
 Identities = 357/375 (95%), Gaps = 2/375 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcagctacactgatagataccccaaggtcatccgtgatttcactcttccctaagaagcc 60
           |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 201 ttcagctacactgatagataccccaaggtcgttcgtgatttcactcttccctaagaagcc 260

                                                                       
Query: 61  taggcccagtgatgggaaattagtaaaagataactttaccgttcttggcctatctcagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggcccagtgatgggaaattagtaaaagataactttaccgttcttggcctatctcagaa 320

                                                                       
Query: 121 caactctaaaggtgtgatctgccttttgaatgtctatgtggttgaatgaggctgtcaagc 180
           ||||||||||||||||||||||||||||| | |||||||||||||| ||||||||||| |
Sbjct: 321 caactctaaaggtgtgatctgccttttgagtatctatgtggttgaacgaggctgtcaa-c 379

                                                                       
Query: 181 ttgtaccatcgacttctcccatatttgttcttatgctattttccctgctctgcaaatctc 240
           |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| || ||
Sbjct: 380 ttgtaccatcgacttctcccgtatttgttcttattctattttccctgcactgcagatatc 439

                                                                       
Query: 241 tacctcaaggaaaacctctaataaacattggtcattcatttgtttttc-ccagaattgac 299
           ||||||||||||||||||||||||||||||||||||| ||| |||||  |||||||||| 
Sbjct: 440 tacctcaaggaaaacctctaataaacattggtcattcttttttttttttccagaattgat 499

                                                                       
Query: 300 tttccaggtgatgaaaccataaagtatctttaagaggaagggagtaagggatgagagagg 359
           ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 500 tttccaggtgatgaaaccataaagtgtctttaagaggaagggagtgagggatgagagagg 559

                          
Query: 360 aagggagtaaaggag 374
           |||||||||||||||
Sbjct: 560 aagggagtaaaggag 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 374
Length of database: 774
Length adjustment: 9
Effective length of query: 365
Effective length of database: 765
Effective search space:   279225
Effective search space used:   279225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)