Query= MSMg01no443_m20.b1 MSMg01no443_m20.b1 CHROMAT_FILE:
MSMg01no443_m20.b1 PHD_FILE: MSMg01no443_m20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:30 2005
(450 letters)
>mm_chr5_29107211_29108060
Length = 850
Score = 824 bits (426), Expect = 0.0
Identities = 438/442 (99%)
Strand = Plus / Plus
Query: 5 ggaattcagatgctctacccaggcccagtgtcaccttctcctcctgctgcctgcagatct 64
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattcagatgctcaagccaggcccagtgtcaccttctcctcctgctgcctgcagatct 264
Query: 65 ggatgtagaactctcaattccttctccagggccatgtctgccttcatgccaccatgcttc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggatgtagaactctcaattccttctccagggccatgtctgccttcatgccaccatgcttc 324
Query: 125 acaccatgatgataatgtactatacctctgaactataaaccagtcccaattaaatggttt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaccatgatgataatgtactatacctctgaactataaaccagtcccaattaaatggttt 384
Query: 185 cctttataagcattgtcttggtcatagtgtctcttcacagtaatagaacactaagacagt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cctttataagcattgtcttggtcatagtgtctcttcacagtaatagaacactaagacagt 444
Query: 245 ccgctttgctatgttttaaacaacattgtgagattttgcaatttgcaagaacaggagttt 304
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 ccgctttgctatgttttaaacaacattgtgagactttgcaatttgcaagaacaggagttt 504
Query: 305 ctgaagactgggtatctaaggttgggtttgagtttggctacagtattccagctatatcag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 505 ctgaagactgggtatctaaggttgggtttgagtttggctacagtattccagctatgtcag 564
Query: 365 tcaccccacagtggacagcagaagggcaggaaagcatgtgaccctgatctgatttcatta 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcaccccacagtggacagcagaagggcaggaaagcatgtgaccctgatctgatttcatta 624
Query: 425 tagactcattgccatggcttgg 446
||||||||||||||||||||||
Sbjct: 625 tagactcattgccatggcttgg 646
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no443_m20.g1 MSMg01no443_m20.g1 CHROMAT_FILE:
MSMg01no443_m20.g1 PHD_FILE: MSMg01no443_m20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:30 2005
(477 letters)
>mm_chr5_29281055_29281932
Length = 878
Score = 862 bits (446), Expect = 0.0
Identities = 466/478 (97%), Gaps = 10/478 (2%)
Strand = Plus / Minus
Query: 1 ccttgcacagtcaggctgaacaccatgacttgagtgagtgctgcagaagagagactgctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ccttgcacagtcaggctgaacaccatgacttgagtgagtgctgcagaagagagactgctc 745
Query: 61 aacctggaaggctgctgagcatggagctgtccactcaagatgtgctgaagtcagcttggc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aacctggaaggctgctgagcatggagctgtccactcaagatgtgctgaagtcagcttggc 685
Query: 121 aggaggagggagtgcaggcacagctgctgctgctgccctaaatccactgtgttcattact 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 aggagg---------aggcacagctgctgctgctgccctaaatccactgtgttcattact 634
Query: 181 gtcactggatgggtatccatttgactttttatattgaacacactctactaa-ctgttaaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 633 gtcactggatgggtatccatttgactttttatattgaacacactctactaatctgttaaa 574
Query: 240 ttcagccagacagtctaataattatccatatattcctttggaatttttaaccttcctagc 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 ttcagccagacagtctaataattatccatatattcctttggaatttttaaccttcctagt 514
Query: 300 ttaatcaccttgaataatgatgcttttattgtgttccaagcttcgtaccttacatttcat 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttaatcaccttgaataatgatgcttttattgtgttccaagcttcgtaccttacatttcat 454
Query: 360 tttcttaccataacgaggggtctagatcttttaggacagtgctggagggaaatggtagga 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 453 tttcttaccataacgaggggtctagatcttttaggacagtgctggagggaaatggtaaga 394
Query: 420 accagtgatctcttctattttattaagtttttacactcccctactgaagcagaacata 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 accagtgatctcttctattttattaagtttttacactcccctactgaagcagaacata 336
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 477
Length of database: 878
Length adjustment: 10
Effective length of query: 467
Effective length of database: 868
Effective search space: 405356
Effective search space used: 405356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
