Query= MSMg01no443_o17.b1 MSMg01no443_o17.b1 CHROMAT_FILE:
MSMg01no443_o17.b1 PHD_FILE: MSMg01no443_o17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:40 2005
(244 letters)
>mm_chr5_140198236_140198879
Length = 644
Score = 439 bits (227), Expect = e-128
Identities = 239/243 (98%)
Strand = Plus / Plus
Query: 1 aaggtgggcaggtatcagcccatggccgactactaccataatgataccatcgcctgggca 60
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||
Sbjct: 201 aaggtgggcaggtatcagcccatggccgactacgaccataatgataccaccgcctgggca 260
Query: 61 ctggtgacccacagtgggtcccctggacactggtgactcacattgggtccccggctcagc 120
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 261 ctggtgacccacagtgggtcccctggacactggtgactcacagtgggtccccggctcagc 320
Query: 121 cctcacctccagctccttagaaggctgatcccttgattgccatccctactcccaactgaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 cctcacctccagctccttagaaggctgatcccttgattgccatccctactcccaacagaa 380
Query: 181 gtagaaggagacaaatccagagaggtccagccaccgggcaagggtggtccagccaagaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtagaaggagacaaatccagagaggtccagccaccgggcaagggtggtccagccaagaca 440
Query: 241 cag 243
|||
Sbjct: 441 cag 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no443_o17.g1 MSMg01no443_o17.g1 CHROMAT_FILE:
MSMg01no443_o17.g1 PHD_FILE: MSMg01no443_o17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:40 2005
(436 letters)
>mm_chr5_140391650_140392482
Length = 833
Score = 687 bits (355), Expect = 0.0
Identities = 415/437 (94%), Gaps = 5/437 (1%)
Strand = Plus / Minus
Query: 1 ttccttctaattgtctcttcctgtgattgaagttcaacccgaggggtgatacagggagac 60
|||||||||||||||||| ||||||| || |||||| |||||||||||||||||||||||
Sbjct: 633 ttccttctaattgtctctccctgtgactggagttcatcccgaggggtgatacagggagac 574
Query: 61 tcttgtcctctgcatggagattgtaggggacagcagatatctatctgaagaccacattgg 120
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 573 tcttgtcctctgcatggagattgtaggggacagcaga----tatctgaagaccacattgg 518
Query: 121 agggtacactaataccttccgacccctggctaaggtcatgctcctgccccattccttaag 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 agggtacgctaataccttccgacccctggctaaggtcatgctcctgccccattccttaag 458
Query: 181 gactgggagacccttttctgcagacctcacccttccatattgggagccctggactgtctc 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 457 gactgggagacccttttctgcagaccacacccttccatattgggagccctggactgtctc 398
Query: 241 ataagagatgttatcctgagagatgggtcacagtggtggggaccccaccgcagaccagcc 300
|||||||| | | ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 397 ataagagaggggaccctgagagatgggtcacagtggtggggaccccaccacagaccagcc 338
Query: 301 tcaacccttggccaagtggatgggg-aaagggctacagggcagtggtctcagagctgatc 359
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 337 tcaacccttggccaagtggatggggaaaagggctacagggcagtggtctcagagctgatc 278
Query: 360 agctcagccaaccttggctcagtttccctctcttccgaagcacataggaagcagggagcc 419
|||||||||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||
Sbjct: 277 agctcagccaaccttggctcagtttccctcccttccaaagcacagaggaagcagggggca 218
Query: 420 gagctcccttctgattc 436
||||||| |||||||||
Sbjct: 217 gagctccgttctgattc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 833
Length adjustment: 9
Effective length of query: 427
Effective length of database: 824
Effective search space: 351848
Effective search space used: 351848
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
