BAC Information

Click to search

BAC

Clone NameMSMg01-444B15
Chromosome5 (Build37)
Map Location 31,310,034 - 31,310,355
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039369, Il6, Tyms, EG242914, Gm444, Hadha, Hadhb, Gpr113, EG384325, D5Wsu178e, Gm1060, Otof, 1700001C02Rik, 1700041E20Rik, Kcnk3, 4930471M23Rik, Cenpa, Dpysl5, Mapre3, 1110039B18Rik, 9430057O19Rik, 2310016E02Rik, Emilin1, Khk, Cgref1, Abhd1, Preb, Tcf23
Downstream geneSlc5a6, 0610007C21Rik, Cad, Slc30a3, Dnajc5g, Trim54, Ucn, Mpv17, Gtf3c2, Eif2b4, Snx17, Zfp513, Ppm1g, ENSMUSG00000055424, Nrbp1, Krtcap3, Ift172, Fndc4, Gckr, Zfp512, 4930548H24Rik, Xab1, Supt7l, Slc4a1ap, Mrpl33, Rbks, LOC100040000, Bre
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444B15.T7 (MSMg01no444_b15.b1)MSMg01-444B15.TJ (MSMg01no444_b15.g1)
ACCAG533349AG533350
length1,052744
length of high quality
(start - end)
---322 (323 - 644)
definitionCHROMAT_FILE: MSMg01no444_b15.b1 PHD_FILE: MSMg01no444_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:54 2005CHROMAT_FILE: MSMg01no444_b15.g1 PHD_FILE: MSMg01no444_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTATTAGTACTGCAATACATAACGGAGAGCGAAATCTTTTCCGAGAAGGG
GGTTCGTGGTCGCGGCCCTTTCTCCGGCAGGAGCGGAGTTGTATCCATGT
CGCGTGTGCATCGTAATAATGATTGGACGGTGACTTAGCGCTTCACCCCG
GGACAACTATTGACGACTGCATAATATATGAATCCGTGGTAAACCCCTAG
TTTAGCCCCCATATACCTTTCAAATACACAACCTACGTCTCATAATAGTG
TCACTACAACCTTACGTTCGGGCGTATTTTTGATATGTTTTTAGTATTAG
GCCCCCGTGGAGCCTACGATTATATCCACGGTTACTTAGTGCGGGACAAA
TTTGTCTCTCCGCTGTGATTACATGTTGTGCACTTCATTGCGGGTTCGCG
CCCCGCGGGCGGAATGCGGGTGTTACCTCCTTGTGATTCTGTCGACATGG
CGTTTTCATGTATTATAGAGAGGGGACCAAGAGGTGGCCGCAATAATATT
AAAGAGTAATAAATGGAGGAGGAGCGTCTTAAGCGCGCGGTGGGCGGACC
GGCGGCGACTTGTTCATATTATCCGATGAAATACTGTTATGCTTCACCCG
CCTTGGCCAAATGGGAGGAGTGGTAGAGGGGGGGAGTTTATACCCGAGAT
GGTCGAGGGGGGGTGGCACGGTGGCTGCACACTTGGGGTGTGAACACGAT
TTAACGATGCGTCGGCCGCGGGAACATCTGGCGGAGGGATGTTATAGGGT
GTCGCACACCGGCGTGGCGCAGCCCTATAGTTAAGTGTGTCTATTTTTGG
GCGGCGGCGCTATACGTTGCTGTTTTTCGGGTAGTACGAATGGGTTTAAA
CAGGGGGTATATGGTGTTATACGGTACGCGTCTTATTTACACCCGCGCCC
GGATCGCGGGCTATATTTTATGTTCCCGATATTTATATTGCGAGCGGGAC
CGCGGGCAGTAGGGTGCCGCACTTTATGACGCGGTTGAGGCAGTGTGGCA
GGGCCATGGGTGGGGTACCACCCACCTTGTGGTGCTCTTATCGGCGCCAC
TG
CGATGCTGTGNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXACTCTGTAGGCCAGGCTGTCCTCAAACT
CACAGAGATTAACCTGTGTCTGCTTCCTGATTGCTGGGATTAAAGGCGTG
CACCACCATGCCTAGCTGTTTGTTGCTAGTTATATTTGGTTGGTTGGTTG
GGTCTCACATAGCCCAGGCTGACTTGAGATTCATTTTGTAGCTGAGTATA
ACCTTGGACTCCCGATCCTCCTGATCCTGTGGTACTGGAATTACAGGAAG
GCCACCATCGTGCTTAGTTATTGGTGTTTATGAAGTGCATAATAGAAAGG
GTGTTATTCATATATGTAAATCTAGAATTAATTACTCCTTGAAGAATGTT
GCAAAAATGATGCCCTACAGCCTAGGGTTTTCTTCAGGGTAAGGTTTTCT
TCTATTTCTTGAGTGGAACTAGAACTATTCACAATAGCCATGAACAGGTT
ATTTTGAAAAGTTCTTCCATTTTGGTTAAGTGGTGAGAATTCCAGAAACC
AGAGTAATTAGCATCCCATAATTAAAGCCTAGACTCCTGCCAGACTACCC
TCCCTGCAAGCACGTCCCGCCCCTGCCAGCCCCTACTAATGACTCACAAT
CGCTCTCCACTATGGAAGACCCTACTAATGGCTGACCACAAAAGATTGCT
CAGTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTTCTGAGTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_b15.g1 MSMg01no444_b15.g1 CHROMAT_FILE:
MSMg01no444_b15.g1 PHD_FILE: MSMg01no444_b15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:54 2005
         (322 letters)



>mm_chr5_31309834_31310555
          Length = 722

 Score =  592 bits (306), Expect = e-173
 Identities = 318/322 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtgtttatgaagtgcataatagaaagggtgttattcatatatgtaaatctagaattaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtgtttatgaagtgcataatagaaagggtgttattcatatatgtaaatctagaattaat 260

                                                                       
Query: 61  tactccttgaagaatgttgcaaaaatgatgccctacagcctagggttttcttcagggtaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactccttgaagaatgttgcaaaaatgatgccctacagcctagggttttcttcagggtaa 320

                                                                       
Query: 121 ggttttcttctatttcttgagtggaactagaactattcacaatagccatgaacaggttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggttttcttctatttcttgagtggaactagaactattcacaatagccatgaacaggttat 380

                                                                       
Query: 181 tttgaaaagttcttccattttggttaagtggtgagaattccagaaaccagagtaattagc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgaaaagttcttccattttggttaagtggtgagaattccagaaaccagagtaattagc 440

                                                                       
Query: 241 atcccataattaaagcctagactcctgccagactaccctccctgcaagcacgtcccgccc 300
           ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||
Sbjct: 441 atcccataattaaagcctagagtcctgccagactaccctccctgcaagcacatcccaccc 500

                                 
Query: 301 ctgccagcccctactaatgact 322
           ||||||| ||||||||||||||
Sbjct: 501 ctgccagtccctactaatgact 522


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)