Query= MSMg01no444_e24.b1 MSMg01no444_e24.b1 CHROMAT_FILE:
MSMg01no444_e24.b1 PHD_FILE: MSMg01no444_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:11 2005
(474 letters)
>mm_chr5_141755926_141756799
Length = 874
Score = 857 bits (443), Expect = 0.0
Identities = 464/471 (98%), Gaps = 2/471 (0%)
Strand = Plus / Minus
Query: 5 gaattcattcactgtac-ccatatctgtgagaatgccaaaattaaatacactgcctggag 63
|||||||||||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct: 674 gaattcattcactg-acagcatatctgtgagaatgccaaagttaaatacactgcctggag 616
Query: 64 tctcaagctcttcccttctcagcacaacccttgcaaaaaggttaggttcggctgtcatca 123
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct: 615 tctcaagctcttcccttctcagcacaacccttacaaaaaggttaggttcagctgtcatca 556
Query: 124 aaaggcaaaagcccttttctggacagtgaagcccattccccaggttgcaccatcagctcc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 aaaggcaaaagcccttttctggacagtgaagcccattccccaggttgcaccatcagctcc 496
Query: 184 aatcagcgacaatgtcagcgcagcaagctgagtaactgttcaacttaatgtgttaatatt 243
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 aatcagtgacaatgtcagcgcagcaagctgagtaactgttcaacttaatgtgttaatatt 436
Query: 244 atttaggcaccttcaataatgtaatgcgaatcacattaaaagcttgacagatttaccaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 atttaggcaccttcaataatgtaatgcgaatcacattaaaagcttgacagatttaccaga 376
Query: 304 aatacttggtgtatctattcctgcagggaggaaaagttactgggaaatagtagcaccttc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatacttggtgtatctattcctgcagggaggaaaagttactgggaaatagtagcaccttc 316
Query: 364 ctggctgaatgtcagaacctttaaaagcatcactgtcccctacagcacattatgacattc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctggctgaatgtcagaacctttaaaagcatcactgtcccctacagcacattatgacattc 256
Query: 424 ctagaaactgctccagcttctaccaattttaattgaattatggaattcaga 474
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 ctagaaactgctccagcttctaccaattttaattgaattatggaattcaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space: 400896
Effective search space used: 400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no444_e24.g1 MSMg01no444_e24.g1 CHROMAT_FILE:
MSMg01no444_e24.g1 PHD_FILE: MSMg01no444_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:11 2005
(567 letters)
>mm_chr5_141572922_141573888
Length = 967
Score = 806 bits (417), Expect = 0.0
Identities = 441/449 (98%)
Strand = Plus / Plus
Query: 119 ctaggtgacagccaattcttgtggggacgcgaaggcagcaggacctggaagcacctggtc 178
||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||
Sbjct: 319 ctaggtgacagccaattcttgtgaggatgcgaaggcagcaggacctggaagcagctggtc 378
Query: 179 acctcagacccccagttaagaacagggagaaaggaaggcatgtgtgccaagtgctccact 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 acctcagacccccagttaagaacagggagaaaggaaggcatgtgtgccaagtgctccact 438
Query: 239 cactgtctctactctcctacagttctactctgaattagggaatggtgtcgcccacggtgg 298
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 439 cactgtctctactctcatacagttctactctgaattagggaatggtgttgcccacggtgg 498
Query: 299 gctgtgttaactaacaaccattaagattttcttcccaggtgacttaggttgtcaaaattg 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gctgtgttaactaacaaccattaagattttcttcccaggtgacttaggttgtcaaaattg 558
Query: 359 acaactaaagccaaccagcacagccacactcagcctagcataagaatacaaccaggacag 418
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 559 acaactaaaaccaaccagcacagccacactcagcctagcataagaatacaaccaagacag 618
Query: 419 ttgggcaccagcatctcctttactctttgggaaagacacgtacgtttgtctttgctctgc 478
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 619 ttgggcaccagcatctcctttactctttgggaaagacacatacgtttgtctttgctctgc 678
Query: 479 gaggttggaagagcctttcccagtgtctccctccaccaactaggaccaaataacagacat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gaggttggaagagcctttcccagtgtctccctccaccaactaggaccaaataacagacat 738
Query: 539 gtggtggcaatggtagggtgggggctgca 567
|||||||||||||||||||||||||||||
Sbjct: 739 gtggtggcaatggtagggtgggggctgca 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
