Query= MSMg01no444_h22.b1 MSMg01no444_h22.b1 CHROMAT_FILE:
MSMg01no444_h22.b1 PHD_FILE: MSMg01no444_h22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:24 2005
(109 letters)
>mm_chr5_108454896_108455404
Length = 509
Score = 203 bits (105), Expect = 2e-57
Identities = 108/109 (99%)
Strand = Plus / Minus
Query: 1 accctgtctcaaaataaatgaataataaaactcacaaagccaaattgagttgtgtgtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 accctgtctcaaaataaatgaataataaaactcacaaagccaaattgagttgtgtgtaat 250
Query: 61 actcttaaaggtcaaatatggggatgggggcaggtggggagggtgggat 109
|||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 249 actcttaaaggtcaaacatggggatgggggcaggtggggagggtgggat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 109
Length of database: 509
Length adjustment: 8
Effective length of query: 101
Effective length of database: 501
Effective search space: 50601
Effective search space used: 50601
X1: 6 (11.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 6 (12.4 bits)
S2: 6 (12.3 bits)
| Query= MSMg01no444_h22.g1 MSMg01no444_h22.g1 CHROMAT_FILE:
MSMg01no444_h22.g1 PHD_FILE: MSMg01no444_h22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:24 2005
(536 letters)
>mm_chr5_108283845_108284780
Length = 936
Score = 992 bits (513), Expect = 0.0
Identities = 531/539 (98%), Gaps = 5/539 (0%)
Strand = Plus / Plus
Query: 1 acagattatgccttactgaactgactcaatttctagagag---tttatgaccaatttttt 57
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 200 acagattatgccttactgaactgactcaatttctagagaggcat--atgaccaatttttt 257
Query: 58 caccttctctccacataaataacatttatctgaaaaggcacaatcctttacagttttata 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 caccttctctccacataaataacatttatctgaaaaggcacaatcctttacagttttata 317
Query: 118 tttgagcctcctgaaagagctgaagaaattttatataggatctagtgtgaagtaccattt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 318 tttgagcctcctgaaagagctgaagaaattttatataggatctagtgtgaagtaccactt 377
Query: 178 taaaatgaggaatggtaatatggttcaatggataaaggcacttgccaagcctgacctgac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 taaaatgaggaatggtaatatggttcaatggataaaggcacttgccaagcctgacctgac 437
Query: 238 gacctatttcaatctctgggactcacgctaggagaaaacagacagctgtgtgttgtcctc 297
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gacctagttcaatctctgggactcacgctaggagaaaacagacagctgtgtgttgtcctc 497
Query: 298 taaactttaaacacccgccataatacacaaaagcctatgtgcacacacattacataatag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taaactttaaacacccgccataatacacaaaagcctatgtgcacacacattacataatag 557
Query: 358 ataaaatgtaactagaaatgaaagaactagcttaaagggatgtaggaggaaactgaaaat 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ataaaatgtaactagaaatgaaagaactagcttaaagggatgtaggaggaaactgaaaat 617
Query: 418 gtcagatcaaatcatgaagatgatagtaaaaaggaatttgagatctatctagagtttaac 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gtcagatcaaatcatgaagatgatagtaaaaaggaatttgagatctatctagagtttaac 677
Query: 478 tggaaaccactaaagtttaaacatggggacaccatgatcttaatttactttatgagagt 536
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 678 tggaaaccactaaagtttaaacatggggacaccatgatcttaatttgctttatgagagt 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
