BAC Information

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BAC

Clone NameMSMg01-445A07
Chromosome5 (Build37)
Map Location 54,822,256 - 54,822,849
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041911, Rbpj, Cckar, Tbc1d19, Stim2
Downstream geneEG666377, LOC666380
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445A07.T7 (MSMg01no445_a07.b1)MSMg01-445A07.TJ (MSMg01no445_a07.g1)
ACCAG534048AG534049
length7331,417
length of high quality
(start - end)
618 (60 - 677)---
definitionCHROMAT_FILE: MSMg01no445_a07.b1 PHD_FILE: MSMg01no445_a07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:05 2005CHROMAT_FILE: MSMg01no445_a07.g1 PHD_FILE: MSMg01no445_a07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:06 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATG
CCCTTGACCCACCATATGAGCCATCCAGAAGGGCAGGAAGACTGTATCAC
AAAGTGGGCCATGCACCAGCATCAGAAAACTACATGAACTACATGGGATC
GCACTGCTCACTGATATTTTTGCGCCCGTGTCCAGATCATCACACACAGA
TCATACACATACACATACACATACACATACACATACACATACACATACAC
ATACACATACACATACACATACACATACACATACACATACACATATACAT
ATACATATATGTTTCTTCACAGATAAAGAACCTGGACTTCAACTGCCTAA
AATGATCCTAAGTGGCTATGGGGCAAGTATATATTGAAACTCAAGTACTT
GGTAAAGATTTGACTGGCTATCTCAAAAGAATACCAGCCATCCCAGTACT
CAGGAGGCTAATGCAAGAGGATCTTGAGTTCCAAGCAAGCTCAGACCACA
CAGTAGAACCCTAATTTAAAAAACAGCATCAACATTCAAATTCCAAGTTA
CAAAAGTGTTCAAAGAAAAGTTCCAAGAAAACACTGAATTCCTTAGAAAG
CTGTATGTTAAATAAACTTCTCTCATTATACTAGGTTCTTTTGATATACT
CTTTACTCCACTTTTTGCTTACTTATTTTGCTTGCTTATTTATTCCATAG
ACTCTTTTCTCCGTTATTTAAATATAATAAAGN
TAGTTGATGTATCTGTGTTCGGCATATGTCTGGGCCTGCCCCTCGTCTTN
ATCATTGTAGACGTCGCAAGACCTACTAGGTAACACTACTCCCCCAGCGC
AGCACTCTTCGCAGCGTGCAGTCCGCGTATGCACGATGAAAATCACTCCC
GCCGCTCCTGTTCCCTCGTGTTCAGCTTATTTACTCTATATNCTATACTG
CATATATATTATCTATCACCTGTACTCTCACACCTTTCTCGTCCTGGCGT
ACGCTGGATGTACGTCTTTCTTTAGTGTTCGCGCTGCTCTTTATGTAGGT
CGCCGAGTATTATTTATATCTACGCCACAGTTTCTGTCTGTTTTTTCTCG
CTNCGCGCGAGATCGCCGTGTATGTAGGTCCAGGTGTCTGCTCAACAACA
CACCGTTCGCCCCTAGACAACACGCTCCCGAGAGCAGCGAGTGTTCGATG
ATCTGTATNGGATCCTATTGCTGTGGGTCTTAGCGTATACGCGCCGCACT
TTGACGATCGAGTATATGCNCTTTTGAGGCTCGCCGACATCCGTTAGCGC
GCTTCGAATGATGGNTATATCGGAGAGACGCTCGCATGTACGCTCCTCTG
GATATAATNCGCGTCACCTATCTAGCCCGTCCTNATCGTTTTTATGTGCT
ACTCCTCCCCTAGACTTGTTCGTGTTAGTGTATTATATAGTGATATATAA
TACGCCACAGCCGCGTTCACCCGCGTTGATTGATATTATATTAGCGCGCT
CGCGCGCGCCGTACTCGGCGATCACTCAGCTAGCGTACGGGCGCTGCTCA
TCGCTGTCTATATCATTCCGCTACATCGAGAGCGTGTATGCTGTCACCGA
GATTTGTAGAGCACGCTTCCACTATCACGTGAGACACCGTGTGATATAGT
TGAGTCTCTCTCGATCCGCGTTTGAGTTCTACGCCGCACCCCAGTCGATC
GAGTATGTTATATTAGCTGTTCATAACAGGTATCCCTGTCTAGTATATGC
CGACGTGTTCTTGTTCCTCAAGTCGCGTTTGTTGCGTCGCGTTATAAATC
AACGTGTTTATCTCTTACGCACTCACGCCATTCGCGGCTGCTTCTTTGTG
TTGTCTTCTCTTTATCACGCCGTCATATCGCTATAAGTCTGATATTCTCG
TCGCACGATATCGTCGTGTAGATGCTCAGCCTGTCGAGATGCGCGCCATC
GTCTAATATGACTACGAGATATACACACGACATTATGACTCACNTCACGG
CGATGTCTTTAATATCTCGTCTGCATGATTTGCACCAACTCTCGATGCTC
ANGGCGCTCGATTGCAGACTTTGAGTGNTCTCGTGANTGNCAGTTGTCGT
GTTAGTCGTAGTCTCTCACGCCGATGTGTACACTTCCTACGCTCGCGTCA
CTTATTCATCCGTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_a07.b1 MSMg01no445_a07.b1 CHROMAT_FILE:
MSMg01no445_a07.b1 PHD_FILE: MSMg01no445_a07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:05 2005
         (618 letters)



>mm_chr5_54822040_54823057
          Length = 1018

 Score = 1060 bits (548), Expect = 0.0
 Identities = 589/618 (95%), Gaps = 24/618 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   caccatatgagccatccagaagggcaggaagactgtatcacaaagtgggccatgcaccag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 caccatatgagccatccagaagggcaggaagactgtatcacaaagtgggccatgcaccag 751

                                                                       
Query: 61  catcagaaaactacatgaactacatgggatcgcactgctcactgatatttttgcgcccgt 120
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 750 catcagaaaactatatgaactacatgggatcgcactgctcactgatatttttgcgcccgt 691

                                                                       
Query: 121 gtccagatcatcacacacagatcatacacatacacatacacatacacatacacatacaca 180
           ||||||||||||||||||||||                        ||||||||||||||
Sbjct: 690 gtccagatcatcacacacagat------------------------catacacatacaca 655

                                                                       
Query: 181 tacacatacacatacacatacacatacacatacacatacacatacacatacacatataca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 tacacatacacatacacatacacatacacatacacatacacatacacatacacatataca 595

                                                                       
Query: 241 tatacatatatgtttcttcacagataaagaacctggacttcaactgcctaaaatgatcct 300
           ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tatacatatatgcatcttcacagataaagaacctggacttcaactgcctaaaatgatcct 535

                                                                       
Query: 301 aagtggctatggggcaagtatatattgaaactcaagtacttggtaaagatttgactggct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 aagtggctatggggcaagtatatattgaaactcaagtacttggtaaagatttgactggct 475

                                                                       
Query: 361 atctcaaaagaataccagccatcccagtactcaggaggctaatgcaagaggatcttgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 atctcaaaagaataccagccatcccagtactcaggaggctaatgcaagaggatcttgagt 415

                                                                       
Query: 421 tccaagcaagctcagaccacacagtagaaccctaatttaaaaaacagcatcaacattcaa 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 414 tccaagcaagctcagaccacacagtaggaccctaatttaaaaaacagcatcaacattcaa 355

                                                                       
Query: 481 attccaagttacaaaagtgttcaaagaaaagttccaagaaaacactgaattccttagaaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 attccaagttacaaaagtgttcaaagaaaagttccaagaaaacactgaattccttagaaa 295

                                                                       
Query: 541 gctgtatgttaaataaacttctctcattatactaggttcttttgatatactctttactcc 600
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 294 gctgtatgttaaataaacttctctcattatactaggttcttttcatatactctttactcc 235

                             
Query: 601 actttttgcttacttatt 618
           ||||||||||||||||||
Sbjct: 234 actttttgcttacttatt 217


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 85
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 1
Length of query: 618
Length of database: 1018
Length adjustment: 10
Effective length of query: 608
Effective length of database: 1008
Effective search space:   612864
Effective search space used:   612864
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)