BAC Information

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BAC

Clone NameMSMg01-445A18
Chromosome5 (Build37)
Map Location 3,796,049 - 3,796,357
singlet/doubletsinglet
Overlap geneAnkib1
Upstream geneLOC171266, LOC100040892, LOC667565, LOC624254, LOC100040940, LOC667585, LOC100034726, Cdk6, 5830415L20Rik, 1700109H08Rik, C030048B08Rik, Pex1, Gatad1, 4930511M11Rik
Downstream geneKrit1, 4932412H11Rik, LOC100041009, LOC667617, Mterf, Akap9, Cyp51, ENSMUSG00000053178, LOC100041073, Fzd1, LOC667678
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445A18.T7 (MSMg01no445_a18.b1)MSMg01-445A18.TJ (MSMg01no445_a18.g1)
ACCAG534070AG534071
length736724
length of high quality
(start - end)
518 (34 - 551)69 (65 - 133)
definitionCHROMAT_FILE: MSMg01no445_a18.b1 PHD_FILE: MSMg01no445_a18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:08 2005CHROMAT_FILE: MSMg01no445_a18.g1 PHD_FILE: MSMg01no445_a18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAATTCTTAC
TGTTCTCACTATTGTGCTATTTCAGTTGTCCCTAGGTTAAACCAAAATCT
ACTTTAAACCAAAATTTCATTCTTCTAAAAGATGGGGAGCATTTTTAAAG
TGGCTGCTACACCTGTTTATCATGGTCCTATCTGGTTCACTGTGCATTTC
CTTTCTGCAGAATAAATTTTTCCTGATTCATCTTGTGCTTTCCTTGCTCT
ATCCCTGAAGTCAGCCATTCTACAAGGAGCCTTGCTTTTCATAGATATTT
ATAACATAAATTTGATAGCTTATGCTCATTGCTACTGGAATATGAGTGCT
TCCAATTCCTTTTGCTGTACATAATTAGGATAGATGGATTGAATATGCAT
ACATATGCAATGCACCCATATACATACCCGTTTTTGTTTTGTTTTTGAGT
TATTTTCCAGACTAGTCTTACATTTACTCTAGAGCCAAGGCTGAGAATCC
TAACTTCACAAAACAAACAACCAACAAATTAGAGGATGTTTGCTATGTAG
TAAGAAATCAGATGTAGACTGTCTGGAGCAGTGTGGTGACTCCACTGTGC
TTGTTTTTGTCTTTCCGTTTATCATCTTAGCTTATCCCCTTGGGCTCATA
CGATGACTTTTTACCCTTAACCAGAACTACCTCTCTATTTCTTCACTCTA
CCCCCACGCACTTGCTTTGTTTTATCCGCCTCTATT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTAGCCAGCAATATCATGACCTCAAATGCTGAGTTT
GGATACCAGCATTCATACCCAAATATATGGAGACCATGACCTTAACTGGG
AACCGTGAGGCCTCCCCAGTTAATAATGAAGGAAAAAACAGGTTGAAATT
GCCAAAGACNNNNCCAGTGTTAAAAAAAGGAGANNNNNNNTNNNNNNNAT
ATGAAAAAAAATAAANNNNGGCCAAAGAAATTTGGGNCTGGCCNCTTAAT
GGAATTTTAAACGGGAAAAAAGATTTTTTAAAGGAAAAGTGTACTGTTTT
GTGCTCGGGGGGGGGGGGGGGGGGGTCTNNNNAAATAATNNACTTNNGTG
GGTTGTGGTGCGGGGGGGGGGGCTGGGTATAAAAAANAAATATACGCCGC
TGGGGGGGGGGGGGGGGGGGGGGGTCANNNAAAAAANNAAAAAAAATNNN
AANATTATGATAAAGGAGATTGCTGGGGGGGGGGGGGGGGGGGCGGGGGG
GGGTCNNNNNNNNNNNNANNATNANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNANANNNNNAANAAAAAAAAAAAAAAAAAAATGGATACTNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTNNTNNCTANTTATTTGTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_a18.b1 MSMg01no445_a18.b1 CHROMAT_FILE:
MSMg01no445_a18.b1 PHD_FILE: MSMg01no445_a18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:08 2005
         (518 letters)



>mm_chr5_3795443_3796360
          Length = 918

 Score =  536 bits (277), Expect = e-156
 Identities = 301/309 (97%)
 Strand = Plus / Minus

                                                                       
Query: 210 cttgctctatccctgaagtcagccattctacaaggagccttgcttttcatagatatttat 269
           ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||
Sbjct: 915 cttgctctatccctgaaatcagccataatacaaggagccttgcttttcatagatatttat 856

                                                                       
Query: 270 aacataaatttgatagcttatgctcattgctactggaatatgagtgcttccaattccttt 329
           |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 aacaaaaatttggtagcttatgctcattgctactggaatatgagtgcttccaattccttt 796

                                                                       
Query: 330 tgctgtacataattaggatagatggattgaatatgcatacatatgcaatgcacccatata 389
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 795 tgctgtacataattaggatagatggattgaatatgcatacatatgcaatacacccatata 736

                                                                       
Query: 390 catacccgtttttgttttgtttttgagttattttccagactagtcttacatttactctag 449
           ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 735 catacccttttttgttttgtttttgagttattttccagactagtcttaaatttactctag 676

                                                                       
Query: 450 agccaaggctgagaatcctaacttcacaaaacaaacaaccaacaaattagaggatgtttg 509
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agccaaggctgagaatcctaacttcacaaaacaaacaaccaacaaattagaggatgtttg 616

                    
Query: 510 ctatgtagt 518
           |||||||||
Sbjct: 615 ctatgtagt 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space:   461264
Effective search space used:   461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)