Query= MSMg01no445_c21.b1 MSMg01no445_c21.b1 CHROMAT_FILE:
MSMg01no445_c21.b1 PHD_FILE: MSMg01no445_c21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:18 2005
(537 letters)
>mm_chr5_15570590_15571526
Length = 937
Score = 932 bits (482), Expect = 0.0
Identities = 524/540 (97%), Gaps = 7/540 (1%)
Strand = Plus / Plus
Query: 2 tcactctgtattacc-ggctggcctccaactcagaaatctgcctgtctctgcctcccaag 60
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcactctgta-gaccaggctggcctccaactcagaaatctgcctgtctctgcctcccaag 259
Query: 61 tgctgggactaaaggcgcctggatttctgtttagtttcattctcttttcctttcttctct 120
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tgctgggattaaaggtgcctggatttctgtttagtttcattctcttttcctttcttctct 319
Query: 121 ccccctctttctcccacttccccctcctcttttccccctcctcctttacctatgttagat 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 ccccctctttctcccacttccccctccccttttccccctcctcctttacctatgttagat 379
Query: 181 aaaccagagcagtgcttctcaactttcccaatgctgtggccctttagtacatttcctcat 240
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaccaaagcagtggttctcaactttcccaatgctgtggccctttagtacatttcctcat 439
Query: 241 gctgtggtgacctccaaccataaagtttcttttttgcctttttttttt---aactgcaac 297
||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||
Sbjct: 440 gctgtggtgacctccaaccataaagttacttttttg--tttttttttttttaactgcaac 497
Query: 298 ttttcctactgttgtgaatcttaatatacatatcggatacactggatatctaatatgcga 357
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 498 ttttcctactgttgtgaatcttaatatacatattggatacactggatatctaatatgcga 557
Query: 358 ccccaatgggttgtgactcacaggttgagaactgctgatcgaaaggatttttaaggccag 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ccccaatgggttgtgactcacaggttgagaactgctgatcgaaaggatttttaaggccag 617
Query: 418 atgaagtattgggacatgatctaatctgttttccccaacagactaggctacatcaatatg 477
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 618 atgaagtattgggacatgatctaatctgttttccccaacagaccaggctacatcaatatg 677
Query: 478 aaaagtcaatgattcaagtgactcagaatatggaagtagagaaactgggacagaagaaaa 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 aaaagtcaatgattcaagtgactcagaatatggaagtagagaaactgggacagaagaaaa 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no445_c21.g1 MSMg01no445_c21.g1 CHROMAT_FILE:
MSMg01no445_c21.g1 PHD_FILE: MSMg01no445_c21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:18 2005
(438 letters)
>mm_chr5_15728904_15729748
Length = 845
Score = 719 bits (372), Expect = 0.0
Identities = 426/446 (95%), Gaps = 9/446 (2%)
Strand = Plus / Minus
Query: 1 aatcacatcaaggtgaaatctggaaattgagattcagaattaagtttagtgaagtggtgt 60
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 645 aatcatatcaaggtgaaatctggaaattgagattcggaattaagtttagtgaagtggtgc 586
Query: 61 aagctactctcggccgcataggaagctggcataaaagtcgactgaatgcaggaggcccgt 120
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 585 aagctactctcggccgcataggaagctggcataaaggtcgactgaatgcaggaggcccgt 526
Query: 121 gccagcctcctcggcaacaatgtgagatttctatctcacaccaaagcagcagcagtagca 180
|||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||
Sbjct: 525 gccagcctcctcggcaacaatgtgagatttctatctcaaaccaaagcagcagcaggagca 466
Query: 181 gcaacaaacaacaataat--t--t--taa-aaaaaacagcaaaacaatacaaaacagaaa 233
||||||||||| |||||| | | ||| ||||||||||||||||||||||||||||||
Sbjct: 465 gcaacaaacaataataataataataataataaaaaacagcaaaacaatacaaaacagaaa 406
Query: 234 aaaatcaatcctgaattaaatgcaaagaataatctaataaatatctattgagcgtccaaa 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 405 aaaatcaatcctgaattaaatgcaaagaataatctaataaatatctattgagcgtcc-aa 347
Query: 294 g-agttctaaagcatatgccacaaggatggaggacaaacagttctgagccatctccacag 352
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gtagttctaaagcatatgccacaaggatggaggacaaacagttctgagccatctccacag 287
Query: 353 ggatagtggaaaacccgttctaaaacatgtgctgcaggaatggtgtaaaaatcgttctaa 412
|||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 286 ggatagtggagaacccgttctaaaacatgtgctgcaggaatggcataaaaatagttctaa 227
Query: 413 acatatacagccggggctgaacagaa 438
||||||||||||||||||||||||||
Sbjct: 226 acatatacagccggggctgaacagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 845
Length adjustment: 9
Effective length of query: 429
Effective length of database: 836
Effective search space: 358644
Effective search space used: 358644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
