BAC Information

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BAC

Clone NameMSMg01-446A02
Chromosome5 (Build37)
Map Location 126,312,772 - 126,313,258
singlet/doubletsinglet
Overlap genenone
Upstream geneDnahc10, Ccdc92, Zfp664, 3110032G18Rik, Ncor2, Scarb1, Ubc, Dhx37, Bri3bp, Aacs, Tmem132b
Downstream geneEG231736, LOC100039178, LOC665760
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446A02.T7 (MSMg01no446_a02.b1)MSMg01-446A02.TJ (MSMg01no446_a02.g1)
ACCAG534802AG534803
length720712
length of high quality
(start - end)
290 (68 - 357)496 (72 - 567)
definitionCHROMAT_FILE: MSMg01no446_a02.b1 PHD_FILE: MSMg01no446_a02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:24 2005CHROMAT_FILE: MSMg01no446_a02.g1 PHD_FILE: MSMg01no446_a02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:24 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ACTCTCGTTTCCTGCAACAAGGCTTGTTTACTAGTTAGGCACAGTGGAGG
CCCGCACCATCTTATAATGTTGATTGCTAACGGCACACATGGCTCTTCTC
AGAGATTACTGGCGGCACGCACGTAATTGCTTGCAGCACGTACCGGCTCT
CCACAATTCACCACGATATCTGCAGTCCCTTCTATGAATAGTCTGTTGTA
ATCTGGAGAGTTCTGGTCATCCACTCTGATACCACTACTGTTGTAGCAAC
TTGAACTTCTCTTAATTTATTCTTTCCCTTTCTATAGAGATGATTCATCC
CTGAAGCATCTACCTGCCACAGAGAATGGGGAGCATAGAAATCAGAGAGA
GGCAGAAGTAATCTAGACTTCAAGCTGAGAAAAGAAAAAGTGGTCCTGGG
GAAAATACAGTGATTTCTGGGTAGAGAATATGGAGCATCCCAGTAAAGGT
AGTTCTGAACTGGCTTGTTTATCTTGAACGCAGACTTGGGCATTGTATAA
AGCTCTCTTGTAAGATCTCATACACAAAATTTTGCTCAATGTCAGACTCA
GAAGTAATACTTCAGCAGTATCCAGGATTCATGCTGTGATAAGACTGGAG
AAACAAAATTTCTTTTTTTCGTGCGCCCAGGTCCTATGCCAAAAGCGCCC
CCCATATCTTACATCGTTAA
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCAGAAAGCAATTTAGTAGATTTGATTAAT
GTCTCCTTACATCACATAGATATTTTCTACAGTGCATATAAGCACATATA
TTTTAGAATATACTGAAACTTAAAAATGTAAATTAAAAAAAAAAACAAAA
ACCTCTACCAACTTCAAATTAAAAAAACACATTTATTTTAGAATTCTCTA
GGATACTCGCAATTTCCTGTATTCCCTACTCATGATGTCCATATGTTAGC
ATCTTACAAATTTGTATGATTATAATGAGGAGAAAATAAAATTTGTAAGG
AAAAAAAAAGACAGTTTTGTCTTAGACTACTTATTAACAAATGCCTGGGC
CACAAACTGTGGCTTATTCCCAGAATAACGTATTTAACACATTCAAAATA
TTTTATGTTTTGTACATTTTTAGTTACCCCTTTATCTATTTACTTAGCAT
CTTCCTAAATATCTCCCTTAGCATATGTGCCAGCATCTGTCCCTGAATCT
GTTTATTCTCCTAATATTTCATAGAACACTCTCTTTTTGAAAAGCCTCAC
CTCATATTTTCCTCCTCAGCTCATTTGTCATACACATTACTCAACCGCCC
ATGATGTTTATAATACAGTCTCAAAATCTGGGTCCTTTATTAACACTTAA
ATTACTCATTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_a02.g1 MSMg01no446_a02.g1 CHROMAT_FILE:
MSMg01no446_a02.g1 PHD_FILE: MSMg01no446_a02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:24 2005
         (496 letters)



>mm_chr5_126312538_126313431
          Length = 894

 Score =  223 bits (115), Expect = 3e-62
 Identities = 387/503 (76%), Gaps = 60/503 (11%)
 Strand = Plus / Plus

                                                                       
Query: 31  tctccttacatcacatag-atattttctacagt-gcatataag---cacatatattttag 85
           ||||||||||||||| || | ||||||||| || | ||||||    ||||||||||||||
Sbjct: 235 tctccttacatcaca-aggacattttctactgtag-atataataaacacatatattttag 292

                                                                       
Query: 86  aatatactgaaactt-aaaaatgtaaattaaaaaaaaaaacaaaaacctctaccaacttc 144
           ||||||| ||||||| ||||||| ||||  ||||||| |       |||||||| |||| 
Sbjct: 293 aatatacagaaacttgaaaaatggaaatggaaaaaaata-------cctctaccgacttt 345

                                                                       
Query: 145 aaattaaaaaaacacatttattttagaattctctaggatactcgcaatttcctgtattcc 204
            |||||||||| |||||||||||||||||||||||||||| | ||||||||| | || ||
Sbjct: 346 gaattaaaaaa-cacatttattttagaattctctaggatagttgcaatttcccgcatacc 404

                                                                       
Query: 205 ctactcatgatgtccatatgttagcatcttaca-aatttgtatgattataatgaggagaa 263
           |||| |||||| ||||||| ||||||||||||| |||  ||||||  ||||| |||||||
Sbjct: 405 ctacacatgatttccatatattagcatcttacataatc-gtatgaaaataattaggagaa 463

                                                                       
Query: 264 aataaaatttgtaaggaaaaaaaaagacagtttt---------gt--ct--t-------- 302
           | |||  |||||||   ||||||||  | |||||         ||  ||  |        
Sbjct: 464 attaacctttgtaa---aaaaaaaatcc-gtttttccttccctgttcctgctccctgaat 519

                                                                       
Query: 303 ----------agactacttattaacaaatgcctgggccacaaactgtggcttattcccag 352
                     |||||| |||||||||||||||| |||||||| || |||||  ||||  |
Sbjct: 520 gacgactctgagactatttattaacaaatgcctaggccacaagctttggctccttcctgg 579

                                                                       
Query: 353 aataacgtatttaacacattcaaaatattttatgttttgtacatttttagttacc-c-ct 410
           | |||| |||||||| |||||||| |||| || || || |||||  |||| |||| | ||
Sbjct: 580 actaacttatttaacccattcaaactattctaagtcttctacatggttagatacctctct 639

                                                                       
Query: 411 tt-atc-tatttacttagcatcttcctaaatatctcccttagcatatgtgccagcatctg 468
           || ||| | ||  |||||||||||||| || |||||||||||||| ||  ||||||||| 
Sbjct: 640 ttcatcctcttc-cttagcatcttcctcaacatctcccttagcatctgccccagcatctt 698

                                  
Query: 469 tccctgaatctg--tttattctc 489
           |||||||||||   |||||||||
Sbjct: 699 tccctgaatctccttttattctc 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 894
Length adjustment: 10
Effective length of query: 486
Effective length of database: 884
Effective search space:   429624
Effective search space used:   429624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)