BAC Information

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BAC

Clone NameMSMg01-446C02
Chromosome5 (Build37)
Map Location 47,782,296 - 47,782,544
singlet/doubletsinglet
Overlap genenone
Upstream geneEG666103
Downstream geneLOC100040865, LOC100040876, Slit2, 4933428G09Rik, Kcnip4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446C02.T7 (MSMg01no446_c02.b1)MSMg01-446C02.TJ (MSMg01no446_c02.g1)
ACCAG534898AG534899
length734734
length of high quality
(start - end)
490 (37 - 526)249 (68 - 316)
definitionCHROMAT_FILE: MSMg01no446_c02.b1 PHD_FILE: MSMg01no446_c02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:34 2005CHROMAT_FILE: MSMg01no446_c02.g1 PHD_FILE: MSMg01no446_c02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:34 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAC
GTGATTACTACCAAATGGCTGAGTAACACCTGAAAAAATGTTCAGCATCC
TTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATTCCATCTCAC
ACCAGTCAGAATGACTCAGGTCAAAATTCAGGTGACAGCAGATGCTGGCG
AGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAAGT
TTGTTCAAGCACTCTGGAAATCAATCTGGAGGTTCCTCAGAAAATTGGAC
ATAGTACTACTGGATTATTCTTCTATACCTCTCCAGGGCATATATCCAGA
AGATGTTCCAACCGATAAGAAGGACACATGCTCCACTAGGTTCATAGCAG
CCTTATTTATAATAACCAGAAGCTGAAAAGAACCCAGATGCCCCTCAGCA
GAGGAATGGATACAGAAAATGTGATACATTTACACAATGGCGTACTACTC
AGCTATTAAAAAGAATGAATTTATGACATTCCTAGGCAAATGCATGGACC
TGGAGCGCATCATCCTGAGTGATGTAACCCAATCACAAAAGAATTCCCAT
GATATGTACTCACTGATAAGTGGAATTTAGCCCAGAGACTTACAATATCC
AAGATTTAATATATTATTTCTGGTACTCCACGACCCTTCCTTATAACGAA
GTACCATGTGTGCGCCCTTTTGTCTCCTTTTTAA
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTGAGCACAGGCTGTTTTCTTTATGCTTTCTCTT
TGGGGATGTTTGCTGATTTTTCTATTCTTCATTCCCGACATCTTGCTCTG
GATCATTTGTCCTGAGTCCCCTTGTAGTGCCCTCTGTGTACACTGGGATT
TTGGCATTATCTCTCATCCCCACTGGCACACCACCACATGTCACTGGTGT
CACACAGTAATATAATATGCTTACATGCTATCTGTTTGCTAAATTAACAA
ATAAATAAATCTGGTATTTATAGAGTACAATACTTATCTGTGTGCATTGT
ATATAGTGCAAATATACACTAACCAAAGTCTAAATATTTAAAATCTGTGT
AACTTAAGTGAGTTTAAAGGATAAATATGTGTCCTCCTTGATATGTTCAA
GGATATTTGGTTAACTAAAATATAATATGATGCTCAAGATGAATGAAATA
TTAGAAATGTCTGCCATATTACAATTTACTTCTGCTGATAATATATCCAA
TGCAAAAATAATGGAAAATATTATATGTATAACAATAGCTCATATATACT
TACTATATATATAATTCACTAATTATTTTACTATAATCATATATTATATT
AAAATCTAAATGCTATTATTTCATTGCATTGTGATATACTATATTACCTT
CTATCACTTATTATAATTTTACTTTACACGATCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_c02.g1 MSMg01no446_c02.g1 CHROMAT_FILE:
MSMg01no446_c02.g1 PHD_FILE: MSMg01no446_c02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:34 2005
         (249 letters)



>mm_chr5_47782096_47782744
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagcacaggctgttttctttatgctttctctttggggatgtttgctgatttttctattc 60
           |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 tgagcacagggtgttttctttatgctttctctttggggaggtttgctgatttttctattc 260

                                                                       
Query: 61  ttcattcccgacatcttgctctggatcatttgtcctgagtccccttgtagtgccctctgt 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttcattcccaacatcttgctctggatcatttgtcctgagtccccttgtagtgccctctgt 320

                                                                       
Query: 121 gtacactgggattttggcattatctctcatccccactggcacaccaccacatgtcactgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gtacactgggattttggcattatctctcatccccactggcacaccaccacatgtcactgg 380

                                                                       
Query: 181 tgtcacacagtaatataatatgcttacatgctatctgtttgctaaattaacaaataaata 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtcacacagtaatataatatgcttacatgctatctgtttgctaaattaacaaataaata 440

                    
Query: 241 aatctggta 249
           |||||||||
Sbjct: 441 aatctggta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)