BAC Information

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BAC

Clone NameMSMg01-446N20
Chromosome5 (Build37)
Map Location 138,428,202 - 138,428,685
singlet/doubletsinglet
Overlap geneAzgp1
Upstream geneFis1, Cldn15, Znhit1, Plod3, LOC639992, Vgf, Ap1s1, Serpine1, Trim56, Muc3, LOC100040941, Ache, 2700038N03Rik, Ars2, Trip6, Slc12a9, Ephb4, Zan, EG665591, Epo, Pop7, EG666372, Perq1, Gnb2, Actl6b, Trfr2, Mospd3, EG640050, Pcolce, Fbxo24, Lrch4, Sap25, Irs3, Hrbl, LOC624083, 6430598A04Rik, Tsc22d4, 2010007H12Rik, Bcdin3, Zcwpw1, Pilra, Pilrb1, Pilrb2, LOC100041016, LOC100041027, Cyp3a13, LOC666429, Gje1
Downstream geneEG243302, LOC100041050, Smok3a, Smok3b, Smok3c, Zkscan1, Zscan21, Zfp113, Cops6, Mcm7, Ap4m1, Taf6, 2610019P18Rik, BC038925, Gm454, BC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N20.T7 (MSMg01no446_n20.b1)MSMg01-446N20.TJ (MSMg01no446_n20.g1)
ACCAG535458AG535459
length780832
length of high quality
(start - end)		484 (55 - 538)98 (83 - 180)
definitionCHROMAT_FILE: MSMg01no446_n20.b1 PHD_FILE: MSMg01no446_n20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:31 2005CHROMAT_FILE: MSMg01no446_n20.g1 PHD_FILE: MSMg01no446_n20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CGCTATACGACTCACTATAGTTCGAGGATCCGCGGAATTCACCATCCACT
TTCCACATAAGTTCACTAGATAAGATGATGTAAAAAATACTTCAAATCTG
AGTGCTTACCTACATGGCAAGAGGTCCTGGGTTCAGTTCCCAGCACTGCA
TAAAACTGGGTACTGTGTCACATACCCATAATCCTAGCACTAGAGAGATG
AAGAGGGTCAGAAGTTCGAAGTCATCATTCGTACCTAGGATCTGAGGCTA
TTGCATGAGACCCTGTTAGACAGAAAAAGACTTGGAATCTATCCACAACT
TATGAAATTCTCCTACTATAAAGAATGTGTTCCCTCTCAGAGTGGCCTGA
AACGCCCAGCCAAGTAGTTTCCTCCTCTGCTGTGTGCCTGGCTAGCAACT
TGTTTGCCAAGATAAAGAATTGAGTGTTTAGATGCCCCAAGCATAAAGGA
ATTGAAAGTTGCTCAGCTGGAGTTGGCATCCATCTGACTGACTTTCCTGT
GGGATCCGGGAGGCTTCAGGGTCTCACACCTTTCAGGGAATGTTTGGTTG
CGAGATCACAAATAACAGAAGTAGTGGAGCTGTCTGGAGGTATGCCTACG
ACGGAGAGGATTTCCTCCGATTCAACAAAGAAATCCCAGCTTGGATCTCC
CTATAACCAGCAGCTGGCAACACCCAGCTTAAGGGTGAAAGCTAAAAAGG
CTTCCTGTTGCGAGGCCAGGGGATACCTATAGGAAGAGTGTCTTTGAATG
TTTTAAAAATACCCGAAACACATCCTATTC

NGTTTGTAACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCCCTTTTCTAGGTGTT
CGCCCTTGTCATCTCAAATAGCTCCCAGTCTACTTTCCTCTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTNNNNNNNNNNNTNNNNNNNNT
NNNNNNNNNNNNTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNN
NNTTTTTTTTTTTNNNTTNNNNNNNNNNNNNTNNNNTTTTTTTTTTTNNT
TTTNNNTTNNNNNTTTNNNTTTTTTTTTTTTTNCNNNCNNNNNNNNNNNN
NCNNNNNNNNNTNTNNTTTTTTTTTTTTTTNNTTNTTTNTTTTNNTTTTC
TTCTTTTNNTNTTTTTTTTTNNTTTTNNTTTTTTTCNTTTTNTTTTTTTT
TNNNTNNTTTTTNTTTTTTTTTTTTTTTTCTTTTTTTNNNNTTTTTTTTT
TTTTTTNNTNTTTTTTNNTNTTTTTTTTTTCNCTTTCCTTTTCTCTCTTT
TCTCTTCTCCTTCCCCTCCCCTTCNNTCTTTTTTTTTTCTTTTTCCTCTT
TCCCCTCTTTTTTCCTTTCCCCCCCCTCCCCCTCTTTCTTCCCCCTCTTT
TTTTTTCCCCTTTTCCCCCCTCTCTTTTTTTCTCCCTCCTCTCCCCCCCT
TTTTCCCTTTTTTTCTTTTTTTTTCTTTTCTCCCCCCTCCTTTTTTTCCC
TTTCTCTCCCNTTTCCTTTTTTTTTTTCTTCCCTTCCCTTTTCNTCCCCC
CCTTTNCCCTTTTCTCTCTCTTTCTTTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n20.b1 MSMg01no446_n20.b1 CHROMAT_FILE:
MSMg01no446_n20.b1 PHD_FILE: MSMg01no446_n20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:31 2005
         (484 letters)



>mm_chr5_138428002_138428885
          Length = 884

 Score =  920 bits (476), Expect = 0.0
 Identities = 482/484 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acataagttcactagataagatgatgtaaaaaatacttcaaatctgagtgcttacctaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acataagttcactagataagatgatgtaaaaaatacttcaaatctgagtgcttacctaca 260

                                                                       
Query: 61  tggcaagaggtcctgggttcagttcccagcactgcataaaactgggtactgtgtcacata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggcaagaggtcctgggttcagttcccagcactgcataaaactgggtactgtgtcacata 320

                                                                       
Query: 121 cccataatcctagcactagagagatgaagagggtcagaagttcgaagtcatcattcgtac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cccataatcctagcactagagagatgaagagggtcagaagttcgaagtcatcattcgtac 380

                                                                       
Query: 181 ctaggatctgaggctattgcatgagaccctgttagacagaaaaagacttggaatctatcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaggatctgaggctattgcatgagaccctgttagacagaaaaagacttggaatctatcc 440

                                                                       
Query: 241 acaacttatgaaattctcctactataaagaatgtgttccctctcagagtggcctgaaacg 300
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 acaacttatgaaattctccaactatgaagaatgtgttccctctcagagtggcctgaaacg 500

                                                                       
Query: 301 cccagccaagtagtttcctcctctgctgtgtgcctggctagcaacttgtttgccaagata 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cccagccaagtagtttcctcctctgctgtgtgcctggctagcaacttgtttgccaagata 560

                                                                       
Query: 361 aagaattgagtgtttagatgccccaagcataaaggaattgaaagttgctcagctggagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagaattgagtgtttagatgccccaagcataaaggaattgaaagttgctcagctggagtt 620

                                                                       
Query: 421 ggcatccatctgactgactttcctgtgggatccgggaggcttcagggtctcacacctttc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggcatccatctgactgactttcctgtgggatccgggaggcttcagggtctcacacctttc 680

               
Query: 481 aggg 484
           ||||
Sbjct: 681 aggg 684


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space:   414276
Effective search space used:   414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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