Query= MSMg01no446_o20.b1 MSMg01no446_o20.b1 CHROMAT_FILE:
MSMg01no446_o20.b1 PHD_FILE: MSMg01no446_o20.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:35 2005
(561 letters)
>mm_chr5_144372483_144373443
Length = 961
Score = 949 bits (491), Expect = 0.0
Identities = 523/537 (97%), Gaps = 8/537 (1%)
Strand = Plus / Minus
Query: 32 tctgcctccagagtgctgggattaaaactgtgtgc------cacccggctcatgcctggc 85
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct: 961 tctgcctccagagtgctgggattaaaactgtgtgccaccatcacccggctcatgcctgac 902
Query: 86 ttcttaatttggagactaaggatccaacccctcccttggcttttttgttttcgtcttccg 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ttcttaatttggagactaaggatccaacccctcccttggcttttttgttttcgtcttccg 842
Query: 146 atatagcctagcctggtcttgaacttgccatctgtctgcctcttggatgctttgattaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 atatagcctagcctggtcttgaacttgccatctgtctgcctcttggatgctttgattaca 782
Query: 206 ggtgccattaccacctggctctatcctctctgagatttagcatactaattgtttgactag 265
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct: 781 ggtgccattaccacctggctctatcctctctgagatttagcatactaaatgagcgactag 722
Query: 266 aggctccattctgcccatacccagcaagtccatcaacaccaccaacgtcagcatcaccac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 aggctccattctgcccatacccagcaagtccatcaacaccaccaacgtcagcatcaccac 662
Query: 326 agcttccttacttttcaggaccctctgaagactaagctcagttcacacagtccctggatc 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 agcttccttacttttcaggaccctctgaagactaagctcagttcacacagtccctggatc 602
Query: 386 cctcccaggatcctcccatacccagcaaacaaggcagatactgtccctgttagagcctgg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 cctcccaggatcctcccatacccagcaaacaaggcagatactgtccctgttagagcctgg 542
Query: 446 gaagtgagactcccagacagtaactcgtctaggaccacacaagacgacaggagaggagcc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gaagtgagactcccagacagtaactcgtctaggaccacacaagacgacaggagaggagcc 482
Query: 506 agcatacatattgcttccactggccccgttcctctggaatcttag-tcagtttcagc 561
|||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct: 481 agcaaacatattgcttccactggccccgttcctctggaatc-tagttcagtttcagc 426
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space: 524001
Effective search space used: 524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_o20.g1 MSMg01no446_o20.g1 CHROMAT_FILE:
MSMg01no446_o20.g1 PHD_FILE: MSMg01no446_o20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:35 2005
(455 letters)
>mm_chr5_144208360_144209211
Length = 852
Score = 779 bits (403), Expect = 0.0
Identities = 441/455 (96%), Gaps = 3/455 (0%)
Strand = Plus / Plus
Query: 1 cttatccctttctctcttacatcacttgcatcaagatattgtctctgttaatgctacttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttatccctttctctcttacatcacttgcatcaagatattgtctctgttaatgctacttg 260
Query: 61 tgtggatgtcattaccttgggccaaatggctgtattctttaaggatgtagggtcaaagct 120
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtggatgtcattaccttggggcaaatggctgtattctttaaggatgtagggtcaaagct 320
Query: 121 gcttgctccaacttgcttcccctgcaaaccttttcatgtatactattattcttgttggaa 180
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctcactccaacttgcttcccctgcaaaccttttcatgtatactattattcttgttggaa 380
Query: 181 gcagaattgtatttgtcataatttaagctattacatattagggcttggcagctccgcacc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 gcagaattgtatttgtcataatttaagctattacatattagggcttggcagctccacacc 440
Query: 241 aaagcccttctgttggaagtactcagccttgaactaaagaaggaaggcaaagtatgcgtt 300
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 441 aaagcccttctgttggaagtactcacccttgaactaaagaaggaaggcaaagtatatgtt 500
Query: 301 ctttcctctttatcagtaagagggcttagggacagctatcctctctggcttctctgttgt 360
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ct---ctctctatcagtaagagggcttagggacagctatcctctctggcttctctgttgt 557
Query: 361 gtaacacatcaggaactggtttagagaacaacatgaggaaataatgtttgtccttgagat 420
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 558 gtaacacatcaggagctggtttagagaacaacgtgaggaaataatgtttgtccttgggat 617
Query: 421 ctgatgagctggaaaacatcttgaaactgaatttc 455
|||||||||||||||||||||||||||||||||||
Sbjct: 618 ctgatgagctggaaaacatcttgaaactgaatttc 652
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 455
Length of database: 852
Length adjustment: 10
Effective length of query: 445
Effective length of database: 842
Effective search space: 374690
Effective search space used: 374690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
