BAC Information

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BAC

Clone NameMSMg01-446O23
Chromosome5 (Build37)
Map Location 7,040,532 - 7,040,788
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041208, EG435830
Downstream geneLOC100042651, 4921511H03Rik, LOC242823, LOC667767, EG546855, Steap4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446O23.T7 (MSMg01no446_o23.b1)MSMg01-446O23.TJ (MSMg01no446_o23.g1)
ACCAG535511AG535512
length775773
length of high quality
(start - end)
249 (67 - 315)181 (62 - 242)
definitionCHROMAT_FILE: MSMg01no446_o23.b1 PHD_FILE: MSMg01no446_o23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:36 2005CHROMAT_FILE: MSMg01no446_o23.g1 PHD_FILE: MSMg01no446_o23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCTCAT
CAATTTTCGTCCAGATCATGTTTTAAATCTCATAACAAATATGAAATGCT
ATATATACATGTATGACACAGATAATAGTGTGTGTGTGTGTGTGTGTGTT
CATGCTTTCTTTAAAACACTAGGTTCTTTTGTGTATTTTCATGAAAAAGT
AAATGAATACAGACATTTTAAAACTATGGAAGTTCATCTGGAAAACAATA
AGTAAGGCTTAGGGAAATAGTCCTGAGACTAGATACAGTCCTTATCTTCT
ATACATAGAGTTCTCCTTTTTTATTCCCAGCATTATGGAATGGAAATGGA
AAAGATGTATTAAACCACATACAAGTAGATAATCGACATAATGCAAAAAA
TTCTGATAATTTGTCCAAGGGAGTTGAAATCAGTATTACTGCAAATAGTG
TACTGTTGTCATAGCATTCCATGTATCAAGTGACTTTTAAATGTTTATTC
ACCACTTAACACTTGAACCACATGGGATATATTTGTTTATACCCCCCTTT
TTTCTACATTAATGGCACTTGCCCATTTTTACTTTCCCTTTCACCCCTAC
TTTCCCCCTTTTTCTTTTTCACCCTTTCCTTCTAAATTCTTTACTACCTT
TTCTTCCTTCCCCCTTATTTTCATTTTTCCCCTCAACCTTCCTTTTTCCC
TCGTATATCTTATTCCGCCTCTTTTTCTCTCCTCCTTTTCCTCTACTTTT
CTATCTACCCTTTTTTCTTTCTTTT
TGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXTACAGACATTCCTGATCTTTCCAAGACTTTTATCATGAATGGGTGTTG
GATCTTGTCGAACGCTTTTTCTGCATCTAACGAGATGATCATGTGGTTTT
TGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATTTTTGTATA
TTAAACCATCTCTGCATCCCTGGAATAAAACCTACTTGGTCATTTTTTTA
TGATTGCTTTAATGTGTTCTTGGATTCGGGTTAGCAAGGATTTTATTGAG
GACCCCCCTTCGAGTGGCATAAGGCAAAACGGCCGGAAGCGCACCACCTT
TTTTTTTCTCCCCTGCGTTTATGCATTAGATTAATTGGTCTTTCTTATTA
TTACCCGCCTCCTATTTTTTAGAACTATACTCTCCCTCTCTTTTTTTCCA
TCATCTTTCCCCCTTACGTTTCCTTTTGCTCTCCCTCCTCCTTTTCCTCA
TTTTTCTTCTCTCCCCTTACATATCTTGTTTCAACTATTATCCCTCTTCT
CCCCTTTTCCTCTTTTTCTTCCCCTTTATTTTCCTCTTTTCCCTTCCCTT
TTCCTTATATTTCCCTTTTCTTCTCGCATCCCCTTTCTCTCTCTTTTCAA
TCCCCCTTTTTTTTCTTTTTTTTTTTTTCTCCTCGCCATATACCCCTCTC
TCTATTATCAACTTTTTTTTTCCTCTTTCTTTTTCCCTCCCTTTCTCCCC
CGTTATCTTCTATCCTTATCAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_o23.b1 MSMg01no446_o23.b1 CHROMAT_FILE:
MSMg01no446_o23.b1 PHD_FILE: MSMg01no446_o23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:36 2005
         (249 letters)



>mm_chr5_7040340_7040988
          Length = 649

 Score =  416 bits (215), Expect = e-121
 Identities = 243/257 (94%), Gaps = 8/257 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgttttaaatctcataacaaatatgaaatgctatatatacatgtatgacacagataat 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 193 catgttttaaatctcataacaaatataaaatgctatatatacatgtatgatacagataat 252

                                                                       
Query: 61  agtgtgtgtgtgtgtgtgtgtgt--------tcatgctttctttaaaacactaggttctt 112
            ||||||||||||||||||||||        ||||||||||||||||||| |||||||||
Sbjct: 253 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttcatgctttctttaaaacagtaggttctt 312

                                                                       
Query: 113 ttgtgtattttcatgaaaaagtaaatgaatacagacattttaaaactatggaagttcatc 172
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 313 ttgtgtattttcatgaaaaagtaaatgaatatagacattttaaaactatggaagttcatc 372

                                                                       
Query: 173 tggaaaacaataagtaaggcttagggaaatagtcctgagactagatacagtccttatctt 232
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tagaaaacaataagtaaggcttagggaaatagtcctgagactagatacagtccttatctt 432

                            
Query: 233 ctatacatagagttctc 249
           |||||||||||||||||
Sbjct: 433 ctatacatagagttctc 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)