Query= MSMg01no447_f08.b1 MSMg01no447_f08.b1 CHROMAT_FILE:
MSMg01no447_f08.b1 PHD_FILE: MSMg01no447_f08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:11 2005
(582 letters)
>mm_chr5_19051393_19052373
Length = 981
Score = 1089 bits (563), Expect = 0.0
Identities = 574/578 (99%), Gaps = 1/578 (0%)
Strand = Plus / Minus
Query: 5 gaattctgcgtatgttcactgaattattagcctattatttgaagcttttgaatctccagt 64
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 gaattctgcgtatgctcactgaattattagcctattatttgaagcttttgaatctccagt 722
Query: 65 tatgatatgattaacctctctggagccaatttttttttttagtttatctttttatggtaa 124
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 721 tatgatatgattaacctctctggagccaa-ttttttttttagtttatctttttatggtaa 663
Query: 125 gcacttagcacaagcattggataaatctcagcaaatcttatatcatttaatcgtttgcag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gcacttagcacaagcattggataaatctcagcaaatcttatatcatttaatcgtttgcag 603
Query: 185 aacaggcataaaatataaggatgcttccaggcaaggttcagattccactaggagagaaaa 244
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 aacaggcatacaatataaggatgcttccaggcaaggttcagattccactaggagagaaaa 543
Query: 245 acagtgaacttgggaagagatgcttacttgagccactttgtaacaaaggccaactacaac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 acagtgaacttgggaagagatgcttacttgagccactttgtaacaaaggccaactacaac 483
Query: 305 aatgaagacatcctcattacaggaagggagacagtggatgtgggaacaagcatgcatttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 aatgaagacatcctcattacaggaagggagacagtggatgtgggaacaagcatgcatttg 423
Query: 365 tctaagcatgtggttagggaggtgagggtttggttggccccagcaaaaggcacagtaagt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tctaagcatgtggttagggaggtgagggtttggttggccccagcaaaaggcacagtaagt 363
Query: 425 gcaaaggcaatgggaagaaagacctgtgtgggaagtaggctgataggcatctgctgtatt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcaaaggcaatgggaagaaagacctgtgtgggaagtaggctgataggcatctgctgtatt 303
Query: 485 tttagtgagaagtaggctgtaaacaatgagagtccaagtgggccaccattttggatgatt 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tttagtgagaagtaggctgtaaacaatgagagtccaagtgggccaccattttggatgatt 243
Query: 545 tatggagctgtccagaggctgaggcggnttaccttagg 582
||||||||||||||||||||||||||| ||||||||||
Sbjct: 242 tatggagctgtccagaggctgaggcggtttaccttagg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 582
Length of database: 981
Length adjustment: 10
Effective length of query: 572
Effective length of database: 971
Effective search space: 555412
Effective search space used: 555412
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_f08.g1 MSMg01no447_f08.g1 CHROMAT_FILE:
MSMg01no447_f08.g1 PHD_FILE: MSMg01no447_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:12 2005
(527 letters)
>mm_chr5_18886478_18887404
Length = 927
Score = 961 bits (497), Expect = 0.0
Identities = 514/527 (97%), Gaps = 12/527 (2%)
Strand = Plus / Plus
Query: 1 agtaatatcacccacacaatatgcacccacattgtatgagggggtgaactgtaattattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtaatatcacccacacaatatgcacccacattgtatgagggggtgaactgtaattattt 260
Query: 61 tttcaatgtttcaagaagtttttaatttaattcataaaagaagtagcactgtatgaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tttcaatgtttcaagaagtttttaatttaattcataaaagaagtagcactgtatgaattt 320
Query: 121 aaaaccctacaaagcagtaataatttgcaagcaaagaaaacatacaaaattctggagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaaccctacaaagcagtaataatttgcaagcaaagaaaacatacaaaattctggagaaa 380
Query: 181 ggtttgttctgggggttaacataaaggtcattgtctagacaatgaaaagcattatctctt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggtttgttctgggggttaacataaaggtcattgtctagacaatgaaaagcattatctctt 440
Query: 241 gtgaccttaggtgcttttaggaaaatgcctcaaaaatatgtttagatttgtctttctata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgaccttaggtgcttttaggaaaatgcctcaaaaatatgtttagatttgtctttctata 500
Query: 301 taataaatacagcagtgttatgatctttttcctctctgtgttcctataatcttaaactcc 360
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 501 taataaatacagcagtgttatgatctttttcctctctgtgtttctataatcttaaactcc 560
Query: 361 tttgtcttataaatagatacactgaaaaatatgagaatcccccaaatggcaagactttta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tttgtcttataaatagatacactgaaaaatatgagaatcccccaaatggcaagactttta 620
Query: 421 gaacctagtaagcattttgttaggggtgcctgtttctaggagcatgacggtgaatgactg 480
||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 621 gaacctagtaagcattttg------------gtttctaggagcatgacggtgaatgactg 668
Query: 481 tcttctgacctgaatactattaactagacatttccagcatctttcta 527
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 tcttctgacctgaatactattaactagacatttccagcatctttcta 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space: 474089
Effective search space used: 474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
