GGCCCATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTCTCTATTTTAAATTACGTATATTAAACTCGAATTCATA
GACCTTGTGAGCACTCCCAGCACAAGTTAAGGGCATCTCTTTTTATTTCT
TCTTCCTTTTTGTGGTGCTGGAAATTGAACTGAGTGTCCCAAGGCGACTC
ATCTACCACCAAACCCATCCTTTGAACTGATGTGATTGTTCAGAAAATAT
ATTTAGACAAACATCTTGTTTAGTGGTATAAATTCCTGTGAGGCACACAG
GTGACGTACAAGGCGTTTGAGGATTTTCTGTCAGTGGAAGCAGTGCATTG
TTGGATTCTATGTGACAGGCATGATAGAAGGAAAGAAGGGAGTTAAGCCC
CCAAAGTTCTAGAAAGAGAGCAGGCTAATCTAATTATTCAACAGTAAATG
TCCCTTGGCCTTCAAGGCAAAGGGTAGAGGATGTGAGGATGGCCTGCTAT
GAGTCTGTCACCAGTGTCAGGAGGGTTGATTTGTGTACCATGTAGTTTCT
ACTATTCCACTTTAAGCTCCGTATGGACTGCGCTACCAGCCATGGCCTCT
CTTTCCTTGGATTCGTTGAAGAAAGTAACCCATCCCCTTGTTCGTCTTAT
TGTTTAATGGTCTGTCCTCCCTTTAAATTTTCCCGCGGGAACAATTACCC
CTTTATTTTTCTCTCCCTTGTTTTCATCACCC

CTAAATCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGAGATAGAGGCTATA
ACGTTTAAAACTAGCTATATCTTTAACGAATAACATCATTTTTCCTTTCT
CTTTCTCTTCAAAATCTTGACTCTCGTTCACACTAATCAGGATTATCCCT
CGTCTTGGAGGTTAACAATCACCAAGGGGCTGTTGTCAGGTTTGAAGGTT
TTCAAGGGCCTGATGTTTTTAATGCCTCATATATAGCATACTCAATATTT
GTTTTGTAAAACCCAGAGAGCCAGTTTGGTCAAGGTACTGTAATTAAATA
TAAGGTCACATTGCTTTTCCCTTGGCACTTCTTCAGTGGAACCCTGATTA
GCCAAAACAAGGTGAGGGGGAAGGCAGATGCTACCGTGGGAAACCGGAGC
CTGCAGATGGAAACTATTAATTAGGAAATACAAATGGACGAAATGCCACT
TGTTTTGAGATAGGCTATGCCATAATAGAAGCAGAGTGCAGTTGGCCAGT
TGCTGAGTCTGCCCGGAACTATCAACCTCAACTAATTCTAGCTCCTGCTG
ATTGGTATGCCCTTTTGCTATCACAGTATATAAAATTTTCTTTTTTGGAA
AAAAATATTCGCTACCTTTTACTTCCCTTATCCCCCCTTCTTATAATTCG
TACATTTTATTCTTATTCTGCTTTCCCCTAGTTTCTTTCTT

Query= MSMg01no447_i04.b1 MSMg01no447_i04.b1 CHROMAT_FILE:
MSMg01no447_i04.b1 PHD_FILE: MSMg01no447_i04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:26 2005
         (465 letters)



>mm_chr5_96783963_96784827
          Length = 865

 Score =  833 bits (431), Expect = 0.0
 Identities = 440/443 (99%)
 Strand = Plus / Plus

                                                                       
Query: 21  aaattacgtatattaaactcgaattcatagaccttgtgagcactcccagcacaagttaag 80
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aaattacatatattaaactcgaattcatagaccttgtgagcactcccagcacaagttaag 280

                                                                       
Query: 81  ggcatctctttttatttcttcttcctttttgtggtgctggaaattgaactgagtgtccca 140
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 agcatctctttttatttcttcttcctttttgtggtgctggaaattgaactgagtgtccca 340

                                                                       
Query: 141 aggcgactcatctaccaccaaacccatcctttgaactgatgtgattgttcagaaaatata 200
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 aggcgactcatctaccaccaaacccatcctttgaactgatgtgattgttcagaaaatata 400

                                                                       
Query: 201 tttagacaaacatcttgtttagtggtataaattcctgtgaggcacacaggtgacgtacaa 260
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tttagacaaacatcttgtttagtggtataaattcctgtgaggcacacaggtgacgtacaa 460

                                                                       
Query: 261 ggcgtttgaggattttctgtcagtggaagcagtgcattgttggattctatgtgacaggca 320
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 ggcgtttgaggattttctgtcagtggaagcagtgcattgttggattctatgtgacaggca 520

                                                                       
Query: 321 tgatagaaggaaagaagggagttaagcccccaaagttctagaaagagagcaggctaatct 380
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tgatagaaggaaagaagggagttaagcccccaaagttctagaaagagagcaggctaatct 580

                                                                       
Query: 381 aattattcaacagtaaatgtcccttggccttcaaggcaaagggtagaggatgtgaggatg 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aattattcaacagtaaatgtcccttggccttcaaggcaaagggtagaggatgtgaggatg 640

                                  
Query: 441 gcctgctatgagtctgtcaccag 463
           ||||||| |||||||||||||||
Sbjct: 641 gcctgctctgagtctgtcaccag 663


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 465
Length of database: 865
Length adjustment: 10
Effective length of query: 455
Effective length of database: 855
Effective search space:   389025
Effective search space used:   389025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no447_i04.g1 MSMg01no447_i04.g1 CHROMAT_FILE:
MSMg01no447_i04.g1 PHD_FILE: MSMg01no447_i04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:26 2005
         (366 letters)



>mm_chr5_96999082_96999847
          Length = 766

 Score =  661 bits (342), Expect = 0.0
 Identities = 360/366 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agagatagaggctataacgtttaaaactagctatatctttaacgaataacatcatttttc 60
           |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct: 566 agagatagaggctataacgtctaaaactagctatatctttaacgaatagcatcatttttc 507

                                                                       
Query: 61  ctttctctttctcttcaaaatcttgactctcgttcacactaatcaggattatccctcgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ctttctctttctcttcaaaatcttgactctcgttcacactaatcaggattatccctcgtc 447

                                                                       
Query: 121 ttggaggttaacaatcaccaaggggctgttgtcaggtttgaaggttttcaagggcctgat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttggaggttaacaatcaccaaggggctgttgtcaggtttgaaggttttcaagggcctgat 387

                                                                       
Query: 181 gtttttaatgcctcatatatagcatactcaatatttgttttgtaaaacccagagagccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtttttaatgcctcatatatagcatactcaatatttgttttgtaaaacccagagagccag 327

                                                                       
Query: 241 tttggtcaaggtactgtaattaaatataaggtcacattgcttttcccttggcacttcttc 300
           ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 326 tttggccaaggtactgtaattaaatataaggtcgcattgcttttcccttggcacttcttc 267

                                                                       
Query: 301 agtggaaccctgattagccaaaacaaggtgagggggaaggcagatgctaccgtgggaaac 360
           |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 266 agtggaactctgattagccaaaacaaggtgaggaggaaggcagatgctaccgtgggaaac 207

                 
Query: 361 cggagc 366
           ||||||
Sbjct: 206 cggagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)