TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTATTTTGTTTCCATTCCTTGATGAACTATCAATGCAGTAAGACTCA
AAAAAAAAGTACCCCCCAATTTATTTTTGAGGTTTCAAGGCTGTCCTGGA
ACTCTAGAACCCCAACTTTAAGACATGCACCTGCCTTGACCTCCTGAGTG
CTGGGATTAAAGGTGTGTGCCTCCACTGCCCAGCTCCGGTTTGGTTTTTA
GGAGCAGATTTTTAACTGCTGAGCCATTTCCCCAGCTCCAAAAGAATTTA
CTAAGTGGCATCTGGTTTATGTCCAGCACCTTTCAGCCCTGTTTGTCTTT
TTACTGGTACTCATGTGACAGAGGGAAGTGAAGTCTGATGCTGCCTTGCG
TTTGTTCCCCATAAGATCTGGCTCTGGTCCTAGAGGGTGCTACAGGAGTG
GCCACGGCTGTGGGGTGCAGGGAGTTGCTATGCAGCACCATCTGTAACTA
ACAGCATTTGGCCCTGGTTATGGGAACAGTTAGTGTTTTTAAGATGCCCA
TTAAGTGCCAGCCCTACTGGTCTGAGAAATGATTGACTATGGGCACCTTT
TATCCATGGCTTTTGATGGGTATGAACATTGGGACTTGTGTGGCCCCCCA
TGCTAATGAACCCTTTCGTCCCTAACCACTAAACTTTGTCTGTCTGAACC
TTATTCGTTTGGCTGCCCTTTTCTATCGTTCCTCCCTGTTCTCTTCTATT
TTGGTTCTACTTTTCTCCACCAATTCTTATTCCCGG

NCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTCACACTTTTTAGAATGGCAG
TCTTCAAAAGTTAAAAGGTGGGGTTGGAGAGATGGCTCTAGTGGTTGAGA
GCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCAAGCAACCACAT
GGTGGCTCACAACCATCTGTAATGGGATCTGATGCCCTCTTCTGGTGTGT
CTGAAGACATCTATACATGAAATAAATAAACATTAAAAAAAAAAGTTAAG
AGGTAAGTACCGTTGACCAATTATATGAAAAGGAACCCATGTACAGTGTT
GATGTGATGTAAGTCAGTATAAGCATTATAGGAAACAGTAAGAAAGGTTC
CTTTAAAACCCAAAATAAAATAATCATGTGGTCCAGCAATTCCATTCTTT
GTATCTATACATGGAAAATGCTGTCGTTAATTCAAAGCAACATTTGTAGC
CCATGCACATTGAAGTATTATTCACTGTAGCCAGAATACAGAAACTGAAT
CAACAACACACATACATATGTGCCTGCATACATGTATCTGGGCACAATGG
AATATTATCCAGGCTTAAAAAAAAACTCTCATCTTTTGTGACACCATGGA
TGATTCCACAGGAAACTGTGGAGAATAAAAGGAAGGCCACCCGCCAAAAA
CGGATAAACTCCCCTTTAAAGGGGAAAGGGGGCCAAAAAATAAACCCCCA
CCTTTTGGGTCTGTCTCTGTACTAAATGACAAA

Query= MSMg01no447_n12.b1 MSMg01no447_n12.b1 CHROMAT_FILE:
MSMg01no447_n12.b1 PHD_FILE: MSMg01no447_n12.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:53 2005
         (492 letters)



>mm_chr5_30098817_30099708
          Length = 892

 Score =  882 bits (456), Expect = 0.0
 Identities = 480/488 (98%), Gaps = 1/488 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctattttgtttccattccttgatgaactatcaatgcagtaagactcaaaaaaaaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 206 gaattctattttgtttccattccttgatgaactatcaatgcagtaagactcaaaaaaaa- 264

                                                                       
Query: 65  gtaccccccaatttatttttgaggtttcaaggctgtcctggaactctagaaccccaactt 124
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 gtaccccccaatttatttttgaggtttcaaggctgtcttggaactctagaaccccaactt 324

                                                                       
Query: 125 taagacatgcacctgccttgacctcctgagtgctgggattaaaggtgtgtgcctccactg 184
           ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct: 325 taagacatgcacctgcctttacctcctgagtgctgggattaatggtgtgtgcctccactg 384

                                                                       
Query: 185 cccagctccggtttggtttttaggagcagatttttaactgctgagccatttccccagctc 244
           |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccagctctggtttggattttaggagcagatttttaactgctgagccatttccccagctc 444

                                                                       
Query: 245 caaaagaatttactaagtggcatctggtttatgtccagcacctttcagccctgtttgtct 304
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 445 caaaagaatttactaagtggcatctggtttatgtccaccacctttcagccctgtttgtct 504

                                                                       
Query: 305 ttttactggtactcatgtgacagagggaagtgaagtctgatgctgccttgcgtttgttcc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttttactggtactcatgtgacagagggaagtgaagtctgatgctgccttgcgtttgttcc 564

                                                                       
Query: 365 ccataagatctggctctggtcctagagggtgctacaggagtggccacggctgtggggtgc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ccataagatctggctctggtcctagagggtgctacaggagtggccacggctgtggggtgc 624

                                                                       
Query: 425 agggagttgctatgcagcaccatctgtaactaacagcatttggccctggttatgggaaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agggagttgctatgcagcaccatctgtaactaacagcatttggccctggttatgggaaca 684

                   
Query: 485 gttagtgt 492
           ||| ||||
Sbjct: 685 gttggtgt 692


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 892
Length adjustment: 10
Effective length of query: 482
Effective length of database: 882
Effective search space:   425124
Effective search space used:   425124
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)