BAC Information

Click to search

BAC

Clone NameMSMg01-448B02
Chromosome5 (Build37)
Map Location 123,772,671 - 123,773,092
singlet/doubletsinglet
Overlap geneWdr66
Upstream genePptc7, Rad9b, Vps29, 1500011H22Rik, Atpbd1c, Arpc3, Anapc7, Atp2a2, Ift81, P2rx7, P2rx4, Camkk2, Anapc5, Rnf34, Fbxl10, LOC100039895, Tmem142a, Morn3, LOC623672, BC022593, Rhof, 4932422M17Rik, Setd1b, Hpd, Psmd9, LOC100042824
Downstream geneBcl7a, Mlxip, LOC673222, Il31, Lrrc43, B3gnt4, Diablo, Vps33a, Clip1, Zcchc8, Rsrc2, Kntc1, LOC100040005, Gpr109a, Gpr81, Denr, Ccdc62, Hip1r, Vps37b, Abcb9, Ogfod2, Arl6ip4, Pitpnm2, Mphosph9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448B02.T7 (MSMg01no448_b02.b1)MSMg01-448B02.TJ (MSMg01no448_b02.g1)
ACCAG536369AG536370
length720744
length of high quality
(start - end)
---466 (82 - 547)
definitionCHROMAT_FILE: MSMg01no448_b02.b1 PHD_FILE: MSMg01no448_b02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:11 2005CHROMAT_FILE: MSMg01no448_b02.g1 PHD_FILE: MSMg01no448_b02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATTTTCGCGTCGCAAACAATANTAAAGTTCGAGANNGNGNGCGGCCGN
NNNNTNTTCTATXXXXXXXXXXXXXXXXXXXXXACTTTCCACCTTNAAAG
NAAGGTTGTTTTTTCCGCCCCAGAGAGGGNAAAAAACCCCCCGGGGGCCG
GGGGGGGGAAAAAAGAAATCTTTCACCAAACACCCTTTGTTTCCCCCNNN
NAAAGTATCCCCAAAACCTTTGGTTTCCTACCTAACATTATTAACCAAAG
AAGAAGGGCCTTCTTGGGCTTTCCCCCACAAAAACTTCCCCTCAGAACCT
GGGGGGGGGGAAGGGAAAAAAACAAAGGTCCCTGGCCAGGGGGAGGGAAA
ATGGACCCCAAAAGCGGAACCCACTCTCTGGGGGAAAGGGGTTTAAAAAA
AGAAACAAGGGGCCCCCCCCCACCCGGGGTCCAAGGGGGGGGGAAAATTT
TCCCCCCGGGCCTTAAATCTTTTGAGGAGGGAGGAGGGGGGGAAAAAAAT
CCCCCAAGAAAAAAAAACTTGGGGGGAAAAAAAAGGGGGGGGGGAAATTT
GGGACACCCCCCCCTCCCGGGGNGGTGTAAAAAAGGGGAGGGGTCCCTAT
TTTATTTCTTTTTAAATAAAAAAAAAAAACCCGCGGCGAATATTTTCTCC
CCCCCTCGGGGGGGGGGGGGGGAAGAACACCCCCCCCCTCCTAAAAAAGA
GGGGGGGGGGGGCGTCGATA
TTATTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACCCATAAGCCTTATGATT
GCCCAAGGGGACTGATAAACTGGCAAACTCCTCCCTGTTTTCCAAGCCAA
GCTGGGTGTGGTGGCATAGGCCTTCAATCCCAGTGACAGGGAGGCTGAGG
CAGGAGAATGGAGAGAGTTTGCAGACCAGAGTCTAACTCCTCCCACCAAG
TGAGTCTGGAGGTTGAACTCAGGCCATCGGGCTCTGGGACCAACACCTTC
ACCCCACTGCGTCATCTTGCCGGCCTGTGAGTCACGTTTCTCACGTCTAG
GTCAGGGACCTTCTTATTAATCCACCCTTGTCGGATATGAAGACAGTCCA
AGATGCTCCTTGAGGTTGAAGCCCTGTCACGTGAGTGTCCCCTGTGACAG
ATGGAGAGCCCGAGGTGTCTGCCTACCCCTACCTCGGCTCTGTGTGCTGG
GAAGTGGCTGGAGGAAATGTCTCCCAGCCGTCCTGGCCTTGTCTTACCTT
TGGTGAGGAGTAAGTTTAGGAAATCCTCTCTCCGAATGGTCTTTTTCCCT
TTTGAATTGGTGTAACCCATCACGTTGAAGTTGTTCCTGGATGCCGGCCA
TATTGTTTGCCAATGGTGGCCTATGTCTCTTGTTAAATCTTTGACCCACT
CCGCTACTGTTATCCCTTCCCTATTATCCCTCCCGGATCCCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_b02.g1 MSMg01no448_b02.g1 CHROMAT_FILE:
MSMg01no448_b02.g1 PHD_FILE: MSMg01no448_b02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:11 2005
         (466 letters)



>mm_chr5_123772227_123773092
          Length = 866

 Score =  808 bits (418), Expect = 0.0
 Identities = 421/422 (99%)
 Strand = Plus / Minus

                                                                       
Query: 45  aactcctccctgttttccaagccaagctgggtgtggtggcataggccttcaatcccagtg 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 aactcctccctgttttccaagccaagctgggtgtggtggcataggccttcaatcccagtg 807

                                                                       
Query: 105 acagggaggctgaggcaggagaatggagagagtttgcagaccagagtctaactcctccca 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 acagggaggctgaggcaggagaatggagagagtttgcagaccagagtctaactcctccca 747

                                                                       
Query: 165 ccaagtgagtctggaggttgaactcaggccatcgggctctgggaccaacaccttcacccc 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ccaagtgagtctggaggttgaactcaggccatcgggctctgggaccaacaccttcacccc 687

                                                                       
Query: 225 actgcgtcatcttgccggcctgtgagtcacgtttctcacgtctaggtcagggaccttctt 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 actgcgtcatcttgccggcctgtgagtcacgtttctcacgtctaggtcagggaccttctt 627

                                                                       
Query: 285 attaatccacccttgtcggatatgaagacagtccaagatgctccttgaggttgaagccct 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 attaatccacccttgtcggatatgaagacagtccaagatgctccttgaggttgaagccct 567

                                                                       
Query: 345 gtcacgtgagtgtcccctgtgacagatggagagcccgaggtgtctgcctacccctacctc 404
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 gtcacgtgagtgtcccctgtgacagatggagagcccgaggtgtctgcctacccctacctc 507

                                                                       
Query: 405 ggctctgtgtgctgggaagtggctggaggaaatgtctcccagccgtcctggccttgtctt 464
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 506 ggctctgtgtgctgggaagtggctggaggaaatggctcccagccgtcctggccttgtctt 447

             
Query: 465 ac 466
           ||
Sbjct: 446 ac 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)