BAC Information

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BAC

Clone NameMSMg01-448F05
Chromosome5 (Build37)
Map Location 139,787,516 - 139,787,765
singlet/doubletsinglet
Overlap genenone
Upstream geneGot2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2, Unc84a, 1110007L15Rik, Centa1
Downstream geneCox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448F05.T7 (MSMg01no448_f05.b1)MSMg01-448F05.TJ (MSMg01no448_f05.g1)
ACCAG536567AG536568
length760734
length of high quality
(start - end)
249 (70 - 318)261 (73 - 333)
definitionCHROMAT_FILE: MSMg01no448_f05.b1 PHD_FILE: MSMg01no448_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:34 2005CHROMAT_FILE: MSMg01no448_f05.g1 PHD_FILE: MSMg01no448_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAATACGCGGAATTCC
TGTGAAGCATACCCGCCAAGGACCTAAGGTGCCTGCAGACAAACAGGGCC
AAGATGAGGAGTGACACCAGAGGCTGTCCTGGGACCTCCACATGCACACT
GTGGCATACGCACATCCCCATTCACTCGCATACATGCACCCTAAACCTAT
GCCCACACGCTGCAAATAAATAATAAATAGACACTGTCAAATCATCAAAA
CAACCTAGAAAAGACACCAAGACAGAACAGGACAGCACTCTGTCTTCAGA
CCTTATTATTGAATTACAATGTTTCTAGAACAGTGTGGCACTGGCCATAG
AAACAGATAAACAGAGCAGAATCCCAAAGCAAACCTGCCCTATGGTGGCA
TCTGAGAACTGAGATAGAATCAGTGCATCAGCCAAGAAGGAAGGCTCTTC
CCATGAGGCTTCTAGGAGGGGAAGACGCTTTGCCGTGACGTCACTCTCCA
GCGAAATCACCGCAAATGCATCACAGCTTGGATTACTAACACTGTATGAC
AGTTATAGCACGGACACAGTTGCGATTCCGGATTAGTCTGATAGCTGTTT
GCATATCATGGATGTGTCAGTGTGCGCAAATTCACATGCTTATGTGATAT
CATGTACCCTCCCTGTCTACTTGTTACTTATCCGCCTGGACCGTGCCCCT
TTCCTTGCAAATCGCCGCCATTTTTTGTAATTCTTACAAGCTCCTGTTAT
CCTTCTTGTC
ATTTCCGATGAAGTGNGTAGCCTGGCGGCCGCCTGTTTCACACTGGGGGT
GAACTATAGAAGTACAGAAGAATTCCTGGGAGGGTTGGGGCTAACCGAGC
TCTTTTTTTTTCTTTTTTTTTTCTTTCCAAGACAGGGTTTCTCTGTATAG
CCCTGGCTGTCCTGGAGCTCACTTTGTAGACCAGGCTGGCCTCGAACTCA
GAAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGTC
ACCATGCCCGGCGCTAACCCAGCTCTTGCTAAGAATGTTTATGGTCCTAG
GTTCACTGCCCAGTATTGATTTTGAGTTGGTGTGCNGGNGTGTGTGTGTG
CGTTTTTTTTTTCCCCCTTTTTTCTGGCGGGTTTGGCCTCTCCTGCCCTC
TTTCCCCCCCCCCCCCGGTTTTTTAGGGGGATTTTATTTTTTGTTTTTTA
GATTTTCTTGCCCGCCTTTCGTTTTTTCTTTCAAATTTTTTTCTTATGTT
AATCCCCCTTGTTTTTCCCCCTCTTCCCTTTTTTCTCCCCCCGCTTTTTT
TCTATTTTTGTCCTCTCCCTTCTTTTTTCCTCTTCCCCTCTCTCTTTTCC
CTTTTCCCCGTTCCCCCCGTCTTCCTTCCTGTTTTTTTTTCTTTATCCGC
CCCACCTTTCACATTTTTCCCCCCCGCTTTGTTCTCGCGTCCGTCCCTAT
CTTCCCTTCCCTTTCCGCACTTTACTCCCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_f05.b1 MSMg01no448_f05.b1 CHROMAT_FILE:
MSMg01no448_f05.b1 PHD_FILE: MSMg01no448_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:34 2005
         (249 letters)



>mm_chr5_139787317_139787965
          Length = 649

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%), Gaps = 1/250 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggacctaaggtgcc-tgcagacaaacagggccaagatgaggagtgacaccagaggctgtc 59
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ggacctaaggtgccctgcagacaaacagggccaagatgaggagtgacaccagaggctgtc 259

                                                                       
Query: 60  ctgggacctccacatgcacactgtggcatacgcacatccccattcactcgcatacatgca 119
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 ctgggacctccacatgcacgctgtggcatacgcacatccccattcactcgcatacatgca 319

                                                                       
Query: 120 ccctaaacctatgcccacacgctgcaaataaataataaatagacactgtcaaatcatcaa 179
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 320 ccctaaacctatgcccacacgctgcaaatacataataaatagacactgtcaaatcatcaa 379

                                                                       
Query: 180 aacaacctagaaaagacaccaagacagaacaggacagcactctgtcttcagaccttatta 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aacaacctagaaaagacaccaagacagaacaggacagcactctgtcttcagaccttatta 439

                     
Query: 240 ttgaattaca 249
            |||||||||
Sbjct: 440 ctgaattaca 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)