XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGTGTCTCCTCTTGACTCCTTAGACACCACACACAAATGGCACTGTCACT
CCCCAGATCTACAAACATAGACATGAGTAAAAAAAAAAATCCTTTTTTGT
TTGTTTGTTTTCAAGACAGGGTTTCTCTGTATAGCCCTGGTTGTCCTGGA
ACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTC
TGCCTCCCGAGTGCTGGAATTAAAGGCGTGTGCCACCACGCCTGGCTTAA
ACAAGTCCTTTTCTAAAAAGTAAAAATGTAATCATTTAAATGAAGCTGAG
TTTAGCCAAGTTCTTTTCTGAGATTTTCTTTCTAGATTAGAGCTTTGCAA
ATTCATCATTCTGGCTTTCTGAGGCTGCATGATTATGAAAGCAAAGTCTA
GCCTATGGATTGTAATATGCTACCTTCGGCTCTGCCTAGATACTGGAAAT
ACTTTAGCTCATTTCATATAATTTACGATCCTACATCCTCTATCATCCCT
TTCCAAATACTGCCTCATATCTTTTGCCCTGTTGCTTGTTTGACCTATTT
TCCTCATCCTCCCTCGTTTTTTTCAACCACCCCCCCTTCCTTTTTCGTAC
TTATCCCCACTTCCCTCCTTTCAGTGTTTCTTATCTCGCCATTCGTTTTC
GTTCTCTTTTCGTCAGCTTTTCTCTCCCCTACTC

ACCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCACTATTTGCTAGACTA
ATTCTTATTCTTTTCTACTGACTTAGAGGACTAAGGCACATAGACAGTGA
CAATGAGGTTTTTATTATTGAAGATATTGTTCTCTTTATTTCATATCACC
TCCCTATTTCATAGTTCCCAAATATAAAAGATAAGAGGCAAGACACATCT
TTATCACGTGATCTCATTTAACATGGTGTCTTCTGGTTCCATCCTTTTCC
TACAAATGATAATAGCTCATTCTTTTTAAAGACTGAATAATACTTTCTTG
TATGCACATAGCATATTTTCTTTGTCCATTCATCTAAGACTGGCTCTTAG
GGTAAGTTCACATTGTGGCTTTTGTGAATAGTGCCACAATAAACACTAGG
CCACACATGCCTCCTTTGTATGGTGACGATACCTCCTGATATACTCCCCG
GGAATGGGATAGCTGGGTCACACATAAGCTCCACGATTGACCCTCGAAGG
AATGGTCTTTTTTTATTCCTATAGCCCTGGCACTATTTTACTCTCTCTCC
CCCCAGTCTCCATAACTTAAAATCTTAAATTCTACCCTCTCGCCAAGGTG
TATTTCTTTTTCTTCCCTGGGGGTTTTTTTTTCCCATTCTTTCTCGGGCG
TCTTTGCGTTTTCATAACACACTCCCCTTTCTTTTTTTTCCCCCCCCTCC
GCTCCCCTTATN

Query= MSMg01no448_g03.b1 MSMg01no448_g03.b1 CHROMAT_FILE:
MSMg01no448_g03.b1 PHD_FILE: MSMg01no448_g03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:39 2005
         (418 letters)



>mm_chr5_46650559_46651376
          Length = 818

 Score =  733 bits (379), Expect = 0.0
 Identities = 407/419 (97%), Gaps = 6/419 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgtctcctcttgactccttagacaccacacacaaatggcactgtcactcccc 64
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 199 gaattcagtgtctcctcttgtctccttagacaccacacacaaatggcactgtcactcccc 258

                                                                       
Query: 65  agatctacaaacatagacatgagtaaaaaaaaaaa--tccttttttgtttgtttgttt-- 120
           ||||| |||||||||||||||||||||||||||||  |||||||||||||||||||||  
Sbjct: 259 agatccacaaacatagacatgagtaaaaaaaaaaaaatccttttttgtttgtttgtttgt 318

                                                                       
Query: 121 --tcaagacagggtttctctgtatagccctggttgtcctggaactcactttgtagaccag 178
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tttcaagacagggtttctctgtatagccctggttgtcctggaactcactttgtagaccag 378

                                                                       
Query: 179 gctggcctcgaactcagaaatccacctgcctctgcctcccgagtgctggaattaaaggcg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gctggcctcgaactcagaaatccacctgcctctgcctcccgagtgctggaattaaaggcg 438

                                                                       
Query: 239 tgtgccaccacgcctggcttaaacaagtccttttctaaaaagtaaaaatgtaatcattta 298
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgtgccaccatgcctggcttaaacaagtccttttctaaaaagtaaaaatgtaatcattta 498

                                                                       
Query: 299 aatgaagctgagtttagccaagttcttttctgagattttctttctagattagagctttgc 358
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 499 aatgaagctgagtttagccaagttcttttctgagattttctttctagataagagctttgc 558

                                                                      
Query: 359 aaattcatcattctggctttctgaggctgcatgattatgaaagcaaagtctagcctatg 417
           ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 559 aaattcagcattctggctttctgaggctgcatgattatgaaagtaaagtctagcctatg 617


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 418
Length of database: 818
Length adjustment: 9
Effective length of query: 409
Effective length of database: 809
Effective search space:   330881
Effective search space used:   330881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)