Query= MSMg01no448_g14.b1 MSMg01no448_g14.b1 CHROMAT_FILE:
MSMg01no448_g14.b1 PHD_FILE: MSMg01no448_g14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:41 2005
(446 letters)
>mm_chr5_37723134_37723979
Length = 846
Score = 673 bits (348), Expect = 0.0
Identities = 385/404 (95%), Gaps = 11/404 (2%)
Strand = Plus / Minus
Query: 6 gaattctccgtgccctgctcttccctgttctgcttcagttggtccatggaacatggccag 65
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gaattctccgtgcccaggtcttccctgttctgcttcagttggtccatggaacatggccag 345
Query: 66 ggtgcactccctcagtaaggatggcaggacatcacttgacattccctggtgccccaagaa 125
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ggtgcactccctcagtaaggatggcaggacatcacttgacattccctggtgccccaagaa 285
Query: 126 atgtcccaggcgcccctgtacactgtaagttgaggcagggtgtaatgtcctgtgggtttg 185
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 atgtcccaggcgcccctgcacactgtaagttgaggcagggtgtaatgtcctgtgggtttg 225
Query: 186 tgccctcagaacactatcctt-----------gttgttcttatattcaaatggggaaact 234
||||||||||| ||||||||| |||||||||||||||| | |||||||||
Sbjct: 224 tgccctcagaatactatccttcagctttccttgttgttcttatattcagacggggaaact 165
Query: 235 gaggttcaaagagacagaccacttccctgggtccccaacctggggagtggccaaattcag 294
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 164 gaggttcaaagagacagaccacttccttgggtccccaacctggggagtggccaaattcag 105
Query: 295 atgcatcctaagatttgtctggtacctgcagagcaagcactgctgcccgccacaccctac 354
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 104 atgcatcctaagatttgtctggtacctgcagagcaagcactgctgccctccacaccctac 45
Query: 355 ctacccctgtctctcaggctcctccatcttggggttctctgctg 398
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 ctacccctgtctctcaggctcctccatcttggggttctctgctg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space: 364496
Effective search space used: 364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_g14.g1 MSMg01no448_g14.g1 CHROMAT_FILE:
MSMg01no448_g14.g1 PHD_FILE: MSMg01no448_g14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:41 2005
(279 letters)
>mm_chr5_37538844_37539522
Length = 679
Score = 509 bits (263), Expect = e-148
Identities = 275/279 (98%), Gaps = 1/279 (0%)
Strand = Plus / Plus
Query: 1 cataccacatctcacattcttttc-tttttttttcttttcttttttcttttcttcccttt 59
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 200 cataccacatctcacattcttttcttttttttttcttttcttttttcttttcttcccttt 259
Query: 60 tcttttatttcctttccttttcttttctttttttctttttccttctttccctttctcttc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tcttttatttcctttccttttcttttctttttttctttttccttctttccctttctcttc 319
Query: 120 ttgttttcttttggtcttatgttatagtttttgttcctttttttgtttttctcactagca 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ttgttttcttttggtcttatgttatagtttttgttcctttttttgtttttctcactagca 379
Query: 180 ttcattctgtggccttgacgactcccatgcgccgccgagaactcgggtgtgtatcctttc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttcattctgtggccttgacgactcccatgcgccgccgagaactcgggtgtgtatcctttc 439
Query: 240 ctttttattggctgatgcagagccgattgagagaggagg 278
||| || |||||||||||||||||||||||||||||||
Sbjct: 440 cttcctactggctgatgcagagccgattgagagaggagg 478
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space: 180900
Effective search space used: 180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
