BAC Information

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BAC

Clone NameMSMg01-448G21
Chromosome5 (Build37)
Map Location 18,569,854 - 18,570,099
singlet/doubletsinglet
Overlap genenone
Upstream geneGnai1, LOC100041818, LOC668167
Downstream gene4921504A21Rik, Magi2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448G21.T7 (MSMg01no448_g21.b1)MSMg01-448G21.TJ (MSMg01no448_g21.g1)
ACCAG536646AG536647
length768800
length of high quality
(start - end)		426 (39 - 464)248 (83 - 330)
definitionCHROMAT_FILE: MSMg01no448_g21.b1 PHD_FILE: MSMg01no448_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:42 2005CHROMAT_FILE: MSMg01no448_g21.g1 PHD_FILE: MSMg01no448_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGGATCCGCGGAATTCT
TTGTTCAGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAA
GTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTG
ATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTAGTC
TTATTGACGGTGTCTTTTGCCTTACAGAAGTTTGTAATTTTATGAGGTCC
CATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAG
GAATTTTTCCCCTGTGCCCGTATCTTCAAGGCTTTTCCCCACTTTCTCCT
CTATAAGTTTCAATGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTA
GATTTGACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCT
ACACGATAACAACCAGTTGTGCCAGCACCAATTGTTTAAAATGCTGGCTT
TCTTCCCCTGGATGGTTTTAGCTTCCCCGCCGAAGATTACGTGACCCTAG
TTGTGCGGGCTCTTTTTTTGGGGCTCCATCCTATTCCTTGGGCCAATTGG
GCGGGCCTATACCAAAATCACGGTATTTTTTATCTAACTCCCTCGGTTTT
AATACTTTAGTCCGTCCGTGGCTTTTTCCCTAGATTCTCTTCTCTCCCAA
GACATCTTTCATTCTATTCTTCCTTTGTCTCTCCATAACCTGTTTCCACC
TTTATTCCTCCCATAATT

AAATAACCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGATCATTATTAGAAAT
CTTATATTTCTTTCCACTTTCAGGAACTTATTTTTTGGAAAATTGCTAAT
TTAACCTTTTTCTGTTATCACATCTTAAAATCTAATTTCTTGAATATAGT
CTATCCTTTTTACCTTTTAACTATGCCTTCTGTTTGTCTTATTTGGTGAT
ATTCTATGGTAAATTTTGTTGAAGTGTCTTTTATTGAATGACTAAGTACT
ATTTTTAAACAATGGCCTGGGCTTCTTTGGCTGTTACATACCAGGTTCAT
CTTACACTCCTTCCTGTGAGGTGGCAATGCCCCACGGGTCATCACCCTTA
TATGACCACCCGTTTTTTCACCGACCCCCCCCCCTACTTGGCTTTATCAC
CTTGCTCCCCCGCATTAAATCCCGCCTAGGTGTCATACCCGGTTGTGGTT
CTCTCTATTGTTGCCCCACTTTTTTTTTTTTTTATATTTTTTTAGACCGC
TGTGTCACACCCTCTCTCCCTCTCTTCTTTATATTTTTTTCTCCTTCACC
CTCATCTCTCTTAATTCATCACACATTCTTTTTTCTTTTCTTCTCTCTAT
CTTTTGTTTTTTCACCTCTGCCCACTCTACTTCTATACCTCATCCCCACA
TCTTTCTGCAATCATATCCATNCTCCCCCGCCTGACCCCATTTTACTTTG
TTCCTCACCCCTTTGTTATTTATTTCCCTCCCCTTCCCCTCCTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_g21.g1 MSMg01no448_g21.g1 CHROMAT_FILE:
MSMg01no448_g21.g1 PHD_FILE: MSMg01no448_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:42 2005
         (248 letters)



>mm_chr5_18569652_18570299
          Length = 648

 Score =  422 bits (218), Expect = e-122
 Identities = 239/246 (97%)
 Strand = Plus / Minus

                                                                       
Query: 3   gatcattattagaaatcttatatttctttccactttcaggaacttattttttggaaaatt 62
           ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 448 gatcattattagaaatcttatatttctttccactttcagaaacatattttttggaaaatt 389

                                                                       
Query: 63  gctaatttaacctttttctgttatcacatcttaaaatctaatttcttgaatatagtctat 122
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gctaatttcacctttttctgttatcacatcttaaaatctaatttcttgaatatagtctat 329

                                                                       
Query: 123 cctttttaccttttaactatgccttctgtttgtcttatttggtgatattctatggtaaat 182
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tctttttaccttttaactatgccttctgtttgtcttatttggtgatattctatggtaaat 269

                                                                       
Query: 183 tttgttgaagtgtcttttattgaatgactaagtactatttttaaacaatggcctgggctt 242
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||
Sbjct: 268 tttgttgaagtgtcttttattgaacgactaaatactatttttaaacaatggcccgggctt 209

                 
Query: 243 ctttgg 248
           ||||||
Sbjct: 208 ctttgg 203


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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