BAC Information

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BAC

Clone NameMSMg01-448L16
Chromosome5 (Build37)
Map Location 15,196,261 - 15,196,489
singlet/doubletsinglet
Overlap geneSpeer7-ps1
Upstream geneSema3e, Pclo, ENSMUSG00000033219, LOC624245, Speer8-ps1, Speer4c, Speer4d, 4930572O03Rik
Downstream gene4930519H02Rik, LOC100041781, Cacna2d1, LOC668121, Hgf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448L16.T7 (MSMg01no448_l16.b1)MSMg01-448L16.TJ (MSMg01no448_l16.g1)
ACCAG536873AG536874
length845780
length of high quality
(start - end)
---230 (74 - 303)
definitionCHROMAT_FILE: MSMg01no448_l16.b1 PHD_FILE: MSMg01no448_l16.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:06 2005CHROMAT_FILE: MSMg01no448_l16.g1 PHD_FILE: MSMg01no448_l16.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:06 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
TTTTTTTTCCCGCTCCATCCACAACATAATCTTTACGACAAAGAACGACA
TCTACTTGATAAGCTCTAATCGACAAATAAAATTATGCTGAACGTAATAT
CCTAATTTCCTCTATCTATATCTCCTCCCAAATACACCCACCCACCACTT
CCCCCCTTTATCATTATGTTCTTACACCATCCTCCGTCCCCTTCCACCCC
CGAACCTTATTTTACACTATCCCCTACCACTTTCCTATACCTCTCATACT
CTATACCCATACGCTTGCCCTCCTCCCACTGTGCCACTACCAGTAGATCT
CCGACGACGACACGCTTTCATCCATGACATCCGCTTATTTTTCGCTCAAC
CACCATATACCACCTTACACCCATAACTCCCTAATCTATATAACCAAATC
CCTGCTCCACTCTCTTCTCTACAATCGAGACACTACGATATGCTTCATTT
CATATATATCACTCTCCCCACAGTCCTATAAGCTACTGCATCTCCGAAGT
TAACAACATAGACATCCCCAACCAATGCTCTCTATAAAACCTCTACTACC
TTTTTAGCCAATCAATATCATCCAACCCCCCCCCACAAAATTTTTCCCGA
TCATTTCTACCTAATACCTATTTTAAGCCCATCACACAACAACACCCCTT
AAGTCAATTNTGATACCACCCGATTATCACAGATCCTCTGGACATACTTC
CACGACTTATCTCTCCTAAATTAAATATACCCCTATAAATTTCCCATACC
CCATATTCCTCTTTACAAACTTGTTCCGAATCTAATATAAAAATTTCTAT
TTCCCATATTGTAATTAACTACCCCATACCCCGCACATATCAAAC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTAGAGGTTCTTTCTCTAGATCCAGAAC
AGGCACAAATGCTGTCTATTTATTAGATGCTCTTCTTGAAACTATGGATA
ATTAAAATATCAGTTCAGTTAACTTGTGGAGAAAAAGAACTCAGAACTTG
GCTATAGATGTTATAACTTACTTGGAATGTATGTGTGCATGTGCATTGTG
CCTGAGAGTATGGGTGAGTGAGTGTTGCTGTGTGTGTGTGTGTGTGTGTG
TGNNNNNNNNTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNTTTTTTTTTTCCCCCTTTNTTTTTNNNTNNNTTTTTTTTTTTTTT
TTTTTTTTTCCTCCCCCTTTTCTCTTTTTTTCCTTNTCTCTCCCTTCTTT
TTCTTTCCTCTTCCTTCCCTTTTTTCCTCCTTCCCCTTTCTTTTCCCCCC
TTTTCTTTCTTTCCTTCTTCCTTTTCCTCTTTTTCTTCCTTTCCCCCCTT
TCCTTTTTTTTTTTTCTTCTCCCTTTTCTTTTCTCTTCCCCCCCTCCCCT
CTTCCTTCTTTTTTTTCTTCCCCTTTTCCTCCTTCCTTTTTTTCCCTCCT
TTCCTTCCCTCTTTTTTTTTTTTTTTTTCTCCCTTTTTCCCCTCCCTTTC
CCCCCCTTCCCCTCTTTTCTTTCTCTTTCCTCCCTTTTCTCCCTTTCTTC
CCTCCCCTCTTTTCCTTTCTTTTTTCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_l16.g1 MSMg01no448_l16.g1 CHROMAT_FILE:
MSMg01no448_l16.g1 PHD_FILE: MSMg01no448_l16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:06 2005
         (230 letters)



>mm_chr5_15196061_15196690
          Length = 630

 Score =  420 bits (217), Expect = e-122
 Identities = 226/229 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagaggttctttctctagatccagaacaggcacaaatgctgtctatttattagatgctct 60
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tagaggttctttctctcgatccagaacaggcacaaatgctgtctatttattagatgctct 260

                                                                       
Query: 61  tcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaaaagaactca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 261 tcttgaaactatggataattaaaatatcagttcagttaacttgtggagaaaaataactca 320

                                                                       
Query: 121 gaacttggctatagatgttataacttacttggaatgtatgtgtgcatgtgcattgtgcct 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 gaacttggctatagatgttataacttactttgaatgtatgtgtgcatgtgcattgtgcct 380

                                                            
Query: 181 gagagtatgggtgagtgagtgttgctgtgtgtgtgtgtgtgtgtgtgtg 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagagtatgggtgagtgagtgttgctgtgtgtgtgtgtgtgtgtgtgtg 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 230
Length of database: 630
Length adjustment: 9
Effective length of query: 221
Effective length of database: 621
Effective search space:   137241
Effective search space used:   137241
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)