Query= MSMg01no448_m09.b1 MSMg01no448_m09.b1 CHROMAT_FILE:
MSMg01no448_m09.b1 PHD_FILE: MSMg01no448_m09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:09 2005
(349 letters)
>mm_chr5_38687878_38688625
Length = 748
Score = 621 bits (321), Expect = 0.0
Identities = 339/345 (98%), Gaps = 1/345 (0%)
Strand = Plus / Plus
Query: 1 atcacatggagaccacgtgtccttccagtctcttctgttccctagagtccagtatctacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcacatggagaccacgtgtccttccagtctcttctgttccctagagtccagtatctacc 260
Query: 61 ttgcatgagcccctcctcctgatgaggtgctgtggtttagaggtgagggcaagcgagact 120
||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||
Sbjct: 261 ttgcatgagcccctcctcctgatgaggtgctgttgtttagaggtgatggcaagcgagact 320
Query: 121 ctggacaaagattcttcccatccctccagtgtggacctgggctctcggtgtgacagtggg 180
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctggacaaagattcttcccatacctccagtgtggacctgggctctcggtgtgacagtggg 380
Query: 181 ggaattcctgagcctagctgggactccagaagctcacagtgtcacctggacgctcttctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggaattcctgagcctagctgggactccagaagctcacagtgtcacctggacgctcttctg 440
Query: 241 tgttatcactctgccaccctccatgggttggagcttcatccaatgatgactgtctcgtga 300
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 441 tgtta-cactctgccaccctccatgggttggagcttcatccaatgatgactggctcgtga 499
Query: 301 tcacaagatggcggacacagtctcaactttcatgtccgtgcttac 345
|||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 500 tcacaagatggcggacacagcctcaactttcatgtccgtgcttac 544
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 349
Length of database: 748
Length adjustment: 9
Effective length of query: 340
Effective length of database: 739
Effective search space: 251260
Effective search space used: 251260
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no448_m09.g1 MSMg01no448_m09.g1 CHROMAT_FILE:
MSMg01no448_m09.g1 PHD_FILE: MSMg01no448_m09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:10 2005
(422 letters)
>mm_chr5_38840606_38841427
Length = 822
Score = 785 bits (406), Expect = 0.0
Identities = 415/418 (99%)
Strand = Plus / Minus
Query: 5 cgtggagaattctgatggaaccacgtccctttgtttggcgtcatctctactctgctgtag 64
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 622 cgtggagaattctgatggaaccacgtccctttgtttggcatcatctctactctgctgtag 563
Query: 65 ccacagacctctctttctctcctgacacaggacaatatgtgttcagttcgcagacatggc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ccacagacctctctttctctcctgacacaggacaatatgtgttcagttcgcagacatggc 503
Query: 125 cacaggctcagcttcagctctgggcattgatgctggtggcacatgaactctccttgagtg 184
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 502 cacaggctcagcttcagctctgggcattgatgctgctggcacatgaactctccttgagtg 443
Query: 185 agctctcaggcccacctggttcacagtagcatggaaataaagtggtggcacgtgggtaat 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 agctctcaggcccacctggttcacagtagcatggaaataaagtggtggcacgtgggtaag 383
Query: 245 ctgccaccgagactgaaggagatgctgggcataagatgctcatcctagaactgacaagag 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctgccaccgagactgaaggagatgctgggcataagatgctcatcctagaactgacaagag 323
Query: 305 tcggccatcatgcttcccatggccatgtgagatgtgagcaccgtggtcacaatgaactct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tcggccatcatgcttcccatggccatgtgagatgtgagcaccgtggtcacaatgaactct 263
Query: 365 tcctgatgtggatcgttggtgcttgaacagtatttgtgtggtgtgcacgtgttttaaa 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tcctgatgtggatcgttggtgcttgaacagtatttgtgtggtgtgcacgtgttttaaa 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
