BAC Information

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BAC

Clone NameMSMg01-448O05
Chromosome5 (Build37)
Map Location 131,082,615 - 131,082,860
singlet/doubletsinglet
Overlap geneCaln1
Upstream geneMmp17, EG620248, Zfp11, 1700016K13Rik, Mrps17, Gbas, Psph, Cct6a, LOC100038887, Sumf2, Phkg1, Chchd2, 2410018M08Rik, 4930579G22Rik, Vkorc1l1, Gusb, Asl, Crcp, Tpst1, Kctd7, Rabgef1, 0610007L01Rik, EG625540, Sbds, Tyw1, A330070K13Rik
Downstream geneWbscr17, Auts2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448O05.T7 (MSMg01no448_o05.b1)MSMg01-448O05.TJ (MSMg01no448_o05.g1)
ACCAG536994AG536995
length754766
length of high quality
(start - end)
243 (66 - 308)320 (81 - 400)
definitionCHROMAT_FILE: MSMg01no448_o05.b1 PHD_FILE: MSMg01no448_o05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:19 2005CHROMAT_FILE: MSMg01no448_o05.g1 PHD_FILE: MSMg01no448_o05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:19 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCTAGAGATCCGCGGAATT
CCTTATGTTCTAGGAATACTCTACAGGAAGAGTGTTGTATGAGGAGTGGT
GGGAGACACAATCCAGTCCATGAGTGGCCTTTCTTCTTCTTTAGGAACCT
CCATTCAGGTAAGTCCAGAATCATGACTGTATCTCAGAAAAGAATGTCAG
GTTAAGTTTTCTACTTTTGTTGTTGTTGTTGTTGTTATAAAACATCATGA
GTGAAAGGGACATAGGGAAAAAAGGGTGATGTTCCAAGACATGGTCCACC
ACTGAAGAGATTTTTTTGTCAACAGCTTGAGACGACCGGTCCCACCACAT
CCTCTGTTAGTGTAAAAGACAAAAGTGTATGGACCTTTTCCAGGTCGCCC
TCATTCATCTATCTCCTGATTCATACAGCTTTGGGCCTTTGCTTACTTTG
CGCTGCCGTCCATCTTTGTGTTACCCCCGCTGTCTTTCTTCTTCGCTCTC
CTTTCCCCCCTTTTCTTCCTTTTTCTTTTCCTCTTTCTCTTCCTTTTAAC
CCCTTACCTACTTCTTCTTCATTTTTCCCCCTCTTTCCTTTTTTCCCTTT
TTTTCCCCATTCTCCCCCCATTTTTTCCTTTCCACCTTCCCTATCCTTTT
TCTTTTTTTTAGTACATCTTTTCGTTCCTTCCCTTTGTTTTCTTTACCCC
CCCTTTTCCTTTTGGTATTTCTCTGTCTTCTATATTTTTTCCTCCGCTCT
CCCC
TCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTGTTTGGCAGCAGGGGA
GACAGGGTCTTATTATGTAGTCCAGGCTGACTTTGGACTTGCGGTATTCC
TCCATACCTCACTCTCCAAGGGTAGAGGGTACACATGAGCCATCACTCTT
GGCCTCTGTTAAATTCTTTTAAAAAAGATATATTTGTGTGTGTGTATGTG
TGTGTGCATGTGTGCGTGCCCGCATGTGCACCTGTTGTATGTACTTTATT
ATGAGTGTATTCATCATGTACTTCTATGCAGAGCCAGAAGACATCAGACC
CCTTCCTTTATTGCTCCCTGCCTTAGTTTCTGAGACAGGGTCTGAACCGG
AAGAGGCTGTTTGGCCGGCGGAGCTCACAGCTTCTACCTGCCTTCATCTA
ACAGTTCTGGGGTGACAGGTGCACATGTGACTGCTTTCAGATTTTATGTG
CCCACTGGTTATTTTGGAACACGGTTTTTTCCACTAATAAAACGCGGCTT
ACTCTCTTTTTTTTTTTTTTTTCCCCCGCTCTGCATCTTATATCTTCCCC
CCCCCATGTTCCTGTTTCCTTATTCCTTCTTTTTTTTCACTTCTCCCCTC
CCCTAATTTCTTCTCCTTCTCTTCTTTTTATTCTTTTGTTCATTTCCCTA
CCCTCTTCCCTTTTACTTTTGTCCCCCCCCCTTTATTTTTTTCCCCCACT
TCCCTGCCTTTTTTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_o05.b1 MSMg01no448_o05.b1 CHROMAT_FILE:
MSMg01no448_o05.b1 PHD_FILE: MSMg01no448_o05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:19 2005
         (243 letters)



>mm_chr5_131082510_131083152
          Length = 643

 Score =  453 bits (234), Expect = e-132
 Identities = 242/246 (98%), Gaps = 3/246 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   atactctacaggaagagtgttgtatgaggagtggtgggagacacaatccagtccatgagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 atactctacaggaagagtgttgtatgaggagtggtgggagacacaatccagtccatgagt 292

                                                                       
Query: 61  ggcctttcttcttctttaggaacctccattcaggtaagtccagaatcatgactgtatctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ggcctttcttcttctttaggaacctccattcaggtaagtccagaatcatgactgtatctc 232

                                                                       
Query: 121 agaaaagaatgtcaggttaagttttctactt---ttgttgttgttgttgttgttataaaa 177
           |||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||
Sbjct: 231 agaaaagaatgtcaggttaagttttctacttttgttgttgttgttgttgttgttataaaa 172

                                                                       
Query: 178 catcatgagtgaaagggacatagggaaaaaagggtgatgttccaagacatggtccaccac 237
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 caccatgagtgaaagggacatagggaaaaaagggtgatgttccaagacatggtccaccac 112

                 
Query: 238 tgaaga 243
           ||||||
Sbjct: 111 tgaaga 106


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)