BAC Information

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BAC

Clone NameMSMg01-448O12
Chromosome5 (Build37)
Map Location 139,680,498 - 139,680,911
singlet/doubletsinglet
Overlap geneUnc84a
Upstream geneBC055004, 0910001L09Rik, BC037034, Gal3st4, Gpc2, Stag3, Got2-ps1, 2610020C11Rik, LOC433955, EG666533, 1700123K08Rik, Zfp68, LOC665882, A430033K04Rik, BC004044, EG384244, Pdgfa, Prkar1b, Heatr2
Downstream gene1110007L15Rik, Centa1, Cox19, Cyp2w1, 3110082I17Rik, D830046C22Rik, Gpr146, C130050O18Rik, Gpr30, Zfand2a, Uncx4.1, LOC100041200, LOC100041209, LOC100041217, Micall2, Ints1, Mafk, BC019731, 1810042K04Rik, A930017N06Rik, LOC100041270, Mad1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448O12.T7 (MSMg01no448_o12.b1)MSMg01-448O12.TJ (MSMg01no448_o12.g1)
ACCAG537008AG537009
length1,161754
length of high quality
(start - end)
---414 (82 - 495)
definitionCHROMAT_FILE: MSMg01no448_o12.b1 PHD_FILE: MSMg01no448_o12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:20 2005CHROMAT_FILE: MSMg01no448_o12.g1 PHD_FILE: MSMg01no448_o12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTCACACCTTTATGTTCCTTGTCCTAATTTTCTCTGCGCTTCGCTTCCT
TCCACCATGCGGCGGTATTAACATGATGAGCTTCCTCATACCCAACGACA
TGCACGACTTTTTTTATGGACCTGGTTATTTGCCTAAAGCCTACTATTCT
GTCGAAGCACGCGTCATGACGGGACTAACAATAAGACAGGCTATTACTAT
ACGACACTCATGTCACACGCTTGACTGATACACCGTTATAACCGAGCGCT
CGTCCNCCATTTAACAACGGATTTATTATTGCCCGCATTGTACCTTGGTT
TTAGATGAGTCTACCGTCCTTATCCGCGCCCAATTTGTGACCTCGTTGCG
CCGTGTTATAGGGCTGTACGCATGTCACGAGTTGCGTGGTGTGGCGTGAC
CTTACTGCTACGCCGTACTTTCAGATTATCCACGTTTCGGCGTGCAGTTT
GAGACACGAATCCGCTGCGCACATAGACACAGGATCTACCAATCGCCGGT
TATCGACGTATGTGCCATCCCTTGTCAACTATCTAATTGTTGTTGAGACC
GTACATATATTGAAATATATATGAATGCGGGAGGGTGTTAGGACTTTATT
TGAGGCGGATCGGAGGACTGAAATGTGGACGAGATTGTTACACACACATG
CGAGCTTGTGATCTCGTGCTTGAATATGCGCGGCAATGCTGGCCGGCATT
ATAGGTGGCGCACACCAATCGGCGATCGCGGGATTAGGTTGTAACCACAT
TCTGCGGAACTATAGGTGTGCGTATATACGGCGCGACTGCAATCGACAAC
TCGCGTTGGTGTTCGTACTTATGCCGCGACGCATAATGCCGCTCAACACC
ACGCGCCGGTATATTAGTGGCCGGTATTATCGCGTCGCGTTGATTATAAA
TCCAAAACCGTGTCGCCCGGAGCGCACGCGAGCGCGTTGTGGGTATATAT
GACGTGTGCGCGCAAGCGCGACATAGATACGTATTCGCGTGTGCGCGGCA
CACCATGCGCGAATTATGTGTAGTCTATCACTAGGTGTTATATCCGCACA
CTATATCTCGTGATTTAGTAGTGCCATGTGAGAGCGCGGCGACATTTGTG
TGCAACGGCATAAGTTNGCTGTGTTCATCTGATATCCTGTGTGTGACCGC
GCCACGCACGN
NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTCCAACCGTACAGGCAA
GAAAAGGCCTTGGGAATCAATTTAACCTCCCAAGGGCAGAACTGGGCACT
GAATGCCACAAGGAAATGTAAAAAGTCCAAGAACAGAAAGACTCACTATC
CTGACAAGCAATGCTGCCCAAAGGCTATACAGATGTGCTGTGACCCTTGT
CACTATCCCAGGACCATTTCTGCAAACCCCAGAAAAGCCGTTCCTCATTT
ACACAGAACTGCAGAAGGTTCCTGATAACAGGTAAGTCTGGAAAAAGGAG
CTGAGCTGAGAAATCCACTGCAGGCCAAACAGCCCTGACATACAGGCAGA
CATACTCCAACAGAAAGTATACAGGGTCAAAGGTTAACCTTCCTTCTGAA
GCCAACTGACAAGGGAAGAAAGTCTCTTTCTGCAAATGCTGCTAGAACGG
TTGAGCTTCTATGGAAAGAATTAAGTCAGATCCTCAGACATCATAGCCCC
ACATGAACTCACAACAGATCAAAACCCTAACAGAAACCCCAAAACTATCT
ACTTTTTACAAGGGGAATAAAAAAAAAGCTTCTCGACCTAGGGGGTGGAT
AACACCCCCCAAGAAAAAGAAATTTTAATTTCCGCGTTAAAAAGGCCAAA
AGCCGGGGCAAAAAACCTTTATTTTTGGTCCCCCGGGTCAAAAGAATTCC
CCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_o12.g1 MSMg01no448_o12.g1 CHROMAT_FILE:
MSMg01no448_o12.g1 PHD_FILE: MSMg01no448_o12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:20 2005
         (414 letters)



>mm_chr5_139680298_139681111
          Length = 814

 Score =  770 bits (398), Expect = 0.0
 Identities = 410/414 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttccaaccgtacaggcaagaaaaggccttgggaatcaatttaacctcccaagggcagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 cttccaaccgtacaggcaagaaaaggccttgggaatcaatttaacctcccaagggcagaa 555

                                                                       
Query: 61  ctgggcactgaatgccacaaggaaatgtaaaaagtccaagaacagaaagactcactatcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctgggcactgaatgccacaaggaaatgtaaaaagtccaagaacagaaagactcactatcc 495

                                                                       
Query: 121 tgacaagcaatgctgcccaaaggctatacagatgtgctgtgacccttgtcactatcccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 tgacaagcaatgctgcccaaaggctatacagatgtgctgtgacccttgtcactatcccag 435

                                                                       
Query: 181 gaccatttctgcaaaccccagaaaagccgttcctcatttacacagaactgcagaaggttc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gaccatttctgcaaaccccggaaaagccgttcctcatttacacagaactgcagaaggttc 375

                                                                       
Query: 241 ctgataacaggtaagtctggaaaaaggagctgagctgagaaatccactgcaggccaaaca 300
           | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 cagagaacaggtaagtctggaaaaaggagctgagctgagaaatccactgcaggccaaaca 315

                                                                       
Query: 301 gccctgacatacaggcagacatactccaacagaaagtatacagggtcaaaggttaacctt 360
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 314 gccctgacatacaggcagacatattccaacagaaagtatacagggtcaaaggttaacctt 255

                                                                 
Query: 361 ccttctgaagccaactgacaagggaagaaagtctctttctgcaaatgctgctag 414
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 ccttctgaagccaactgacaagggaagaaagtctctttctgcaaatgctgctag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)