Query= MSMg01no449_g18.b1 MSMg01no449_g18.b1 CHROMAT_FILE:
MSMg01no449_g18.b1 PHD_FILE: MSMg01no449_g18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:03 2005
(506 letters)
>mm_chr5_45065378_45066284
Length = 907
Score = 882 bits (456), Expect = 0.0
Identities = 492/504 (97%), Gaps = 1/504 (0%)
Strand = Plus / Minus
Query: 4 ggaattccatccctattgatctcatgggagaaggaaagaagcataggttgtgctccacgc 63
||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 897 ggaattccatccctaaggatctcatggaagaaggaaagaagcataggttgtgctccacac 838
Query: 64 atgtgtcatggcagttgttagcccttctccacatacacacaacaaacaaacaaataaaca 123
|||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||
Sbjct: 837 atgtgtcatggcagttgtgagcccttctccacatacacacaacaaacaagcaaacaaaca 778
Query: 124 aacaaaacaaacatttctttcttaataaattagataatttataattaataaacaataatt 183
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 777 aacaaaacaaacatttctttcttaataaattagataatttataattaataaataataatt 718
Query: 184 gattataaaactccattagtaat-aaaaactatttaaagaagaggagaataatgtatgtt 242
|||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct: 717 aattataaaactccattagtaataaaaaactatttaaagaagaggagaataatatatgtt 658
Query: 243 agcacttaaacaaaacattggcaacaatagaattgcatatcatgtaattaagtatgcatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 agcacttaaacaaaacattggcaacaatagaattgcatatcatgtaattaagtatgcatt 598
Query: 303 taaattagaattgagctagcaagattcattccatttttaggagacaattgcccctggggg 362
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 597 taaattagaattgagctagcaagattcattccatttttaagagacaattgcccctggggg 538
Query: 363 cgggggaggagagaaatatactgtatgatatggggaccctaagcatttatttttatttat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 cgggggaggagagaaatatactgtatgatatggggaccctaagcatttatttttatttat 478
Query: 423 ttcaattcattagaaaggaatccagcttatcactgaaccgttgtcagctcgggagagtgg 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 ttcaattcattagaaaggaatccagcttatcactgaaccgttgtcagctcgggagagtgg 418
Query: 483 gcttcaatcttcatcatcctgtgc 506
||||||||||||||||||||||||
Sbjct: 417 gcttcaatcttcatcatcctgtgc 394
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 907
Length adjustment: 10
Effective length of query: 496
Effective length of database: 897
Effective search space: 444912
Effective search space used: 444912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_g18.g1 MSMg01no449_g18.g1 CHROMAT_FILE:
MSMg01no449_g18.g1 PHD_FILE: MSMg01no449_g18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:03 2005
(458 letters)
>mm_chr5_44908829_44909686
Length = 858
Score = 847 bits (438), Expect = 0.0
Identities = 448/452 (99%), Gaps = 2/452 (0%)
Strand = Plus / Plus
Query: 7 agtcagggctattcagagagaaaccttgtctcaaaaagcaaaaacaaaaacaaaaacaga 66
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 agtcagggcta--catagagaaaccttgtctcaaaaagcaaaaacaaaaacaaaaacaga 266
Query: 67 agccaaagcaaacaaacaacaaaacccaaacagaaaaataaacgaacaaaacccaaaaca 126
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agcaaaagcaaacaaacaacaaaacccaaacagaaaaataaacgaacaaaacccaaaaca 326
Query: 127 acaacagaatcgaaataactaagcctaacatctcagctcacatagcaccttccgtggaca 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 acaacagaatcgaaataactaagcctaacatctcagctcacatagcaccttccgtggaca 386
Query: 187 ccttctgaactctttcctgtgctggaggccagtttccattagttatactcacagaactat 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ccttctgaactctttcctgtgctggaggccagtttccattagttatactcacagaactat 446
Query: 247 gttccatttctgagtctgaaatcccaaacaccaaaaaattttggtgagattacatgacac 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 gttccatttctgagtctgaaatcccaaacaccaaaaaattttggtgagattacatgacac 506
Query: 307 ctctctctctctggccacaaacacttgagaatgagaccatgatttttcttgtcagtcatt 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctctctctctctggccacaaacacttgagaatgagaccatgatttttcttgtcagtcatt 566
Query: 367 gtacatccagtatcttgcaccacacatatccagtccacattctttgaataccaagaatga 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 gtacatccagtatcttgcaccacacatatccagtccacattctttgaataccaagaatga 626
Query: 427 taatgaatgaatgaatggctagcacacagtaa 458
||||||||||||||||||||||||||||||||
Sbjct: 627 taatgaatgaatgaatggctagcacacagtaa 658
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 858
Length adjustment: 10
Effective length of query: 448
Effective length of database: 848
Effective search space: 379904
Effective search space used: 379904
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
