BAC Information

Click to search

BAC

Clone NameMSMg01-450B05
Chromosome5 (Build37)
Map Location 76,047,342 - 76,218,725
singlet/doubletdoublet
Overlap geneKit, EG664874
Upstream geneLnx1, EG619945, Chic2, Gsh2, LOC100039083, Olfr1401-ps1, Pdgfra, LOC100039125, LOC100039143, LOC100039158, LOC100039169
Downstream geneKdr, Gabarapl2-ps5_758.1, Srd5a2l, Tmem165, Apc-ps1, Clock, Ube2n-ps1, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450B05.T7 (MSMg01no450_b05.b1)MSMg01-450B05.TJ (MSMg01no450_b05.g1)
ACCAG537893AG537894
length744747
length of high quality
(start - end)
119 (419 - 537)442 (86 - 527)
definitionCHROMAT_FILE: MSMg01no450_b05.b1 PHD_FILE: MSMg01no450_b05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:52 2005CHROMAT_FILE: MSMg01no450_b05.g1 PHD_FILE: MSMg01no450_b05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:19:52 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,047,342 - 76,047,460)(76,218,284 - 76,218,725)
sequence
NCCCTCATAATTGCGGCGCTAAACGACTCCTATTCGTACGGGGCGCGGAA
TCNNATTTTGCTTCAGATGGGCTCNGAGNCACGGGCCTATGGGCCCCTTG
TCAGATATTATTTCCATGAATGGAATACTTATATTTAGCCAAGAAAAGCA
GACTCTGTCGAATGACGGTTGTATCGAATTCTGTAAAGCAAATTTAGTGG
TAGACGATGGGCGCGCTTCTTTATTACACGGAGCAACATATTTTTTTGGC
TGTTGTGATTTTCAAAGGGACTGCGAATGGAAGTTTTCTTTTGTAATTCC
TGTAAATATTGATAAGTTTACATGAAGNGCCTGCTGNGAAGGACAAGCCA
TTTAGCCTCTTTTACTGCTTTGTCTAGTTTTAGACAACCCTAGATTTCAC
TTAGAACCCAATTTTTAGATACCCAGGCCCCTTGAATTCAAGACACTAAT
AGATCCTCACTTAACACTCCTGTGGAGAACGCAGCATAAAGTCTGGGGAT
AGATAGTAGATGGTTTTCATAGTTTGAGAATCATCTCCTCCCTCAACCCT
CCACCCCCACCCCCACTGCCCACGCTAAAATAACTTCAACCCTAGAAGGG
TTCTCTTCCTACTGTCCAGGCGGAAAGGGACTAAAAGGATCGATTCTTTC
TTTTTTTTTAGAGAAAAATCCAGAAACCCCGATTCACTGTATCAATGCTT
CGCCTGAGTCCTCTTGTTCCGGACGAAAGGTTACGACCGTGGAC
CTTATTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCACAAAGCACAT
TATTTATTTATTTCCATGTATTTATTTGTTTGTTTGTTTGTTTTAGTGCT
GGATACTACCATAGGTGTTTTGAATACATCTGGAAACAAAACCTAAAAAG
ACCTCTTACCTTTGAGAATTTATGCAAGTGTATAATAAATAAATAGCATA
GTATGTGAAAATCAATTGAGTGCTATTCCTCACGTGAACGAACACAAATG
AAAGGGATCTGGAGATGATAAGTGTTTTTGCTAGTGTTGTGTCAGCTTGG
TGAGGCTACCACCCAGTCGTCTAATCAAATACTAATCTTGATATGATCAG
AAAGATACTCTGTAGATGTGTTTACAACTTCAGTTAGTTGACTTTAAGTA
AAGGGACTTACCCTTACTAATATAAATGGGTCTCACCCAACTTGTTCAAG
AAGTTAGAAAGACTTGAGGCCTGCAGCCCTGAGTTTTCAGTCTACTGTCT
AACAGCTCTTGCATGTATGAATTCCCTAATTCTTTAAAATAATTTCATAT
GAACTCTGTCCTGATGTTGATTTGCTCCTTTCAATTGTTTGTTACGCATA
TTTATCTCCTTATCTTTTTTCCCCCTCTTTTTATTTCCTCTACCTTTCCT
TTTTTTTAATTACCCCGATCTTTTTTGTTTACTCCCTTCTTTTTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_b05.b1 MSMg01no450_b05.b1 CHROMAT_FILE:
MSMg01no450_b05.b1 PHD_FILE: MSMg01no450_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:52 2005
         (119 letters)



>mm_chr5_76047142_76047660
          Length = 519

 Score =  223 bits (115), Expect = 4e-63
 Identities = 118/119 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atacccaggccccttgaattcaagacactaatagatcctcacttaacactcctgtggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atacccaggccccttgaattcaagacactaatagatcctcacttaacactcctgtggaga 260

                                                                      
Query: 61  acgcagcataaagtctggggatagatagtagatggttttcatagtttgagaatcatctc 119
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 acgcagcataaagtctggggatagatagtagatggtttttatagtttgagaatcatctc 319


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 119
Length of database: 519
Length adjustment: 8
Effective length of query: 111
Effective length of database: 511
Effective search space:    56721
Effective search space used:    56721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no450_b05.g1 MSMg01no450_b05.g1 CHROMAT_FILE:
MSMg01no450_b05.g1 PHD_FILE: MSMg01no450_b05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:52 2005
         (442 letters)



>mm_chr5_76218216_76219057
          Length = 842

 Score =  824 bits (426), Expect = 0.0
 Identities = 438/442 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcacaaagcacattatttatttatttccatgtatttatttgtttgtttgtttgtttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 attcacaaagcacattatttatttatttccatgtatttatttgtttgtttgtttgtttta 451

                                                                       
Query: 61  gtgctggatactaccataggtgttttgaatacatctggaaacaaaacctaaaaagacctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 gtgctggatactaccataggtgttttgaatacatctggaaacaaaacctaaaaagacctc 391

                                                                       
Query: 121 ttacctttgagaatttatgcaagtgtataataaataaatagcatagtatgtgaaaatcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 ttacctttgagaatttatgcaagtgtataataaataaatagcatagtatgtgaaaatcaa 331

                                                                       
Query: 181 ttgagtgctattcctcacgtgaacgaacacaaatgaaagggatctggagatgataagtgt 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| 
Sbjct: 330 ttgagtgctattcctcacgtgaacgaacacaaatgaaaggggtctggagatgataagtgg 271

                                                                       
Query: 241 ttttgctagtgttgtgtcagcttggtgaggctaccacccagtcgtctaatcaaatactaa 300
           ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 ttgcgctagtgttgtgtcagcttggtgaggctaccacccagtcgtctaatcaaatactaa 211

                                                                       
Query: 301 tcttgatatgatcagaaagatactctgtagatgtgtttacaacttcagttagttgacttt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 tcttgatatgatcagaaagatactctgtagatgtgtttacaacttcagttagttgacttt 151

                                                                       
Query: 361 aagtaaagggacttacccttactaatataaatgggtctcacccaacttgttcaagaagtt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 150 aagtaaagggacttacccttactaatataaatgggtctcacccaacttgttcaagaagtt 91

                                 
Query: 421 agaaagacttgaggcctgcagc 442
           ||||||||||||||||||||||
Sbjct: 90  agaaagacttgaggcctgcagc 69


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 842
Length adjustment: 9
Effective length of query: 433
Effective length of database: 833
Effective search space:   360689
Effective search space used:   360689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)