BAC Information

Click to search

BAC

Clone NameMSMg01-450D02
Chromosome5 (Build37)
Map Location 77,699,854 - 77,874,308
singlet/doubletdoublet
Overlap geneRest, 2610024G14Rik, Polr2b, Igfbp7
Upstream geneClock, EG665055, Pdcl2, Pafah1b1-ps3, Nmu, LOC665065, EG639545, Exoc1, Cep135, LOC100039117, A730089K16Rik, LOC665107, LOC100039299, C530008M17Rik, A230062G08Rik, Ppat, LOC664998, Paics, Srp72, Arl9, 1700023E05Rik, Hod, Spink2
Downstream genePea15b, LOC669227, LOC100039398
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450D02.T7 (MSMg01no450_d02.b1)MSMg01-450D02.TJ (MSMg01no450_d02.g1)
ACCAG537981AG537982
length737790
length of high quality
(start - end)
124 (128 - 251)138 (72 - 209)
definitionCHROMAT_FILE: MSMg01no450_d02.b1 PHD_FILE: MSMg01no450_d02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:01 2005CHROMAT_FILE: MSMg01no450_d02.g1 PHD_FILE: MSMg01no450_d02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:01 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,874,185 - 77,874,308)(77,699,854 - 77,699,986)
sequence
GTCGGATCTAAAATTGCGGCCGCTAAACGAATACTATTCGGAACGGAGGC
GCGGAANTCNACCAATACTAAAGGAACGCACGNGNTTGCCTACATTTCTG
ACATAGAAAACTCACAACATATTTCCTCAATTCTCTGGCCCTGGCGGAAA
GCCACATCACTCCCTGGAAAGCCCCCTTGGGTGTGAAGAAAATGCCAGCC
TGGATATCAAAAGGTTGATTCTTCTCAGCCCTGCTCTGTGATTCGGGCAA
AAATTTTTAGGGAAAGAGGGGGTCTCGTGTGTGATAAGCCAATCCATCTA
AACTTCATCCTAGNCTTTTTTTGATGTTTTTTCATTGAGTACCTTTTACC
GAAAGCTGCTCTTTCGTGCCCGTTTCAATTTCATCTGAGTTTCTCTCTCC
TGGCCTCTAGTTCTCTTTCCCGCCTCAAGTGGTGACCCAACTCTCTCTTT
ATAGTTTAAGAGCGTCCCACCTCTAGGCTTTCTCATTTCATATTCTAGAC
CATCGAGAGCGGATGCTCTTTGCTTTTGGCGACCCATGTGCCTGTCCCAA
AAAACCCAGGCAACCATATGCTTTTCCCCTGGCGTGGTTTTGAGTCTCCC
TCTGTCTACGCCCCCTTTTCGTTGTTCCACCACCCGTTCTCCACTCACCT
CGTTCTTTTTTTTTTTTATTTGCCCTTCCACTGTTCCGAATCTCTTCCGT
TACATACTGTTTCCTTTCTCCTTTTTCTCGTTCCGCC
CCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTTCCTGCGAAATTCCAGGACAGCCAGGGCTGGACAAAT
AGAACCTTCTCTGGGGTAGGGTGGACTGGAGGATAGGGTTGGGGGTGACA
GGCACAAAACAATAAAAATTCAGGTCTGCTGTTCTAAAGGGCAAACATTC
TAATCCACTCTGCACACAGTAGGGAAGATAGAAGGCTTTATATTCTGAAG
TGTTTACCTTTATGTTTCCATAACACCAGAAACTTCCTGTGTTCACTGAA
AACTGCAGCTGCTAACACCATTTTTTTTTTTAGTGAGCCACCTCTCCCAG
CTGCTGTATGCTCTTACCCCCCCGTTCTGTGCATGGATAACCATATCTAT
ACCTTATTCTGCCTCACCCTCCTCATACTTTCTCTTATTCATTATCACTC
TCCCTTGTTCTTCCCGACATTCCCACACTTTTCCCCCTCCCCCCTTTCTC
ATCGTCGCTCACCACACTCCCTTCTTCCCTTCCCCCTATTTCTTATCTCT
CACTCATTTTTATATTCCTCCCCACCCCCTCCACCTCCCTCCCCCCATTT
TTTTTTCCCCCCTCTCTCTTCCTTTTCTTCCCTCCTATTTTTACTAATCC
CTCCCTCTTTTATTTCTCCCTCCCTTTCTTATTTTCTTCTTCCACCCCCT
ATATTTCATACCCCTATCTTTATCTTCCCTCATCCCCTTTTCTCCCCATA
CTCCTTACATTCTTTCACTCACCCACTTCCCTCCCCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_d02.b1 MSMg01no450_d02.b1 CHROMAT_FILE:
MSMg01no450_d02.b1 PHD_FILE: MSMg01no450_d02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:01 2005
         (124 letters)



>mm_chr5_77873985_77874508
          Length = 524

 Score =  240 bits (124), Expect = 2e-68
 Identities = 124/124 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caattctctggccctggcggaaagccacatcactccctggaaagcccccttgggtgtgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 caattctctggccctggcggaaagccacatcactccctggaaagcccccttgggtgtgaa 265

                                                                       
Query: 61  gaaaatgccagcctggatatcaaaaggttgattcttctcagccctgctctgtgattcggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gaaaatgccagcctggatatcaaaaggttgattcttctcagccctgctctgtgattcggg 205

               
Query: 121 caaa 124
           ||||
Sbjct: 204 caaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 524
Length adjustment: 8
Effective length of query: 116
Effective length of database: 516
Effective search space:    59856
Effective search space used:    59856
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no450_d02.g1 MSMg01no450_d02.g1 CHROMAT_FILE:
MSMg01no450_d02.g1 PHD_FILE: MSMg01no450_d02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:01 2005
         (138 letters)



>mm_chr5_77699652_77700189
          Length = 538

 Score =  242 bits (125), Expect = 7e-69
 Identities = 131/133 (98%)
 Strand = Plus / Plus

                                                                       
Query: 3   ttccaggacagccagggctggacaaatagaaccttctctggggtagggtggactggagga 62
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 203 ttccaggacagccagggctggacaaatagaaccctctctggggtagggtggactggagga 262

                                                                       
Query: 63  tagggttgggggtgacaggcacaaaacaataaaaattcaggtctgctgttctaaagggca 122
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 263 tagggttgggggtgacaggcacaaaacaagaaaaattcaggtctgctgttctaaagggca 322

                        
Query: 123 aacattctaatcc 135
           |||||||||||||
Sbjct: 323 aacattctaatcc 335


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 538
Length adjustment: 8
Effective length of query: 130
Effective length of database: 530
Effective search space:    68900
Effective search space used:    68900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)